Enum varlociraptor::cli::Varlociraptor
source · pub enum Varlociraptor {
Preprocess {
kind: PreprocessKind,
},
Call {
kind: CallKind,
},
FilterCalls {
method: FilterMethod,
},
DecodePHRED,
Estimate {
kind: EstimateKind,
},
Plot {
kind: PlotKind,
},
Genotype,
MethylationCandidates {
input: PathBuf,
output: Option<PathBuf>,
},
}
Variants§
Preprocess
Fields
§
kind: PreprocessKind
Call
FilterCalls
Fields
§
method: FilterMethod
DecodePHRED
Estimate
Fields
§
kind: EstimateKind
Plot
Genotype
MethylationCandidates
Trait Implementations§
source§impl Clone for Varlociraptor
impl Clone for Varlociraptor
source§fn clone(&self) -> Varlociraptor
fn clone(&self) -> Varlociraptor
Returns a copy of the value. Read more
1.0.0 · source§fn clone_from(&mut self, source: &Self)
fn clone_from(&mut self, source: &Self)
Performs copy-assignment from
source
. Read moresource§impl Debug for Varlociraptor
impl Debug for Varlociraptor
source§impl Default for Varlociraptor
impl Default for Varlociraptor
source§impl<'de> Deserialize<'de> for Varlociraptor
impl<'de> Deserialize<'de> for Varlociraptor
source§fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>where
__D: Deserializer<'de>,
fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>where
__D: Deserializer<'de>,
Deserialize this value from the given Serde deserializer. Read more
source§impl Serialize for Varlociraptor
impl Serialize for Varlociraptor
source§impl StructOpt for Varlociraptor
impl StructOpt for Varlociraptor
source§fn from_clap(matches: &ArgMatches<'_>) -> Self
fn from_clap(matches: &ArgMatches<'_>) -> Self
Builds the struct from
clap::ArgMatches
. It’s guaranteed to succeed
if matches
originates from an App
generated by StructOpt::clap
called on
the same type, otherwise it must panic.source§fn from_args() -> Selfwhere
Self: Sized,
fn from_args() -> Selfwhere
Self: Sized,
Builds the struct from the command line arguments (
std::env::args_os
).
Calls clap::Error::exit
on failure, printing the error message and aborting the program.source§fn from_args_safe() -> Result<Self, Error>where
Self: Sized,
fn from_args_safe() -> Result<Self, Error>where
Self: Sized,
Builds the struct from the command line arguments (
std::env::args_os
).
Unlike StructOpt::from_args
, returns clap::Error
on failure instead of aborting the program,
so calling .exit
is up to you.source§fn from_iter<I>(iter: I) -> Self
fn from_iter<I>(iter: I) -> Self
Gets the struct from any iterator such as a
Vec
of your making.
Print the error message and quit the program in case of failure. Read moreAuto Trait Implementations§
impl RefUnwindSafe for Varlociraptor
impl Send for Varlociraptor
impl Sync for Varlociraptor
impl Unpin for Varlociraptor
impl UnwindSafe for Varlociraptor
Blanket Implementations§
source§impl<T> BorrowMut<T> for Twhere
T: ?Sized,
impl<T> BorrowMut<T> for Twhere
T: ?Sized,
source§fn borrow_mut(&mut self) -> &mut T
fn borrow_mut(&mut self) -> &mut T
Mutably borrows from an owned value. Read more
§impl<T> Pointable for T
impl<T> Pointable for T
§impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,
impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,
§fn to_subset(&self) -> Option<SS>
fn to_subset(&self) -> Option<SS>
The inverse inclusion map: attempts to construct
self
from the equivalent element of its
superset. Read more§fn is_in_subset(&self) -> bool
fn is_in_subset(&self) -> bool
Checks if
self
is actually part of its subset T
(and can be converted to it).§fn to_subset_unchecked(&self) -> SS
fn to_subset_unchecked(&self) -> SS
Use with care! Same as
self.to_subset
but without any property checks. Always succeeds.§fn from_subset(element: &SS) -> SP
fn from_subset(element: &SS) -> SP
The inclusion map: converts
self
to the equivalent element of its superset.