Enum varlociraptor::cli::CallKind
source · pub enum CallKind {
Variants {Show 13 fields
mode: VariantCallMode,
propagate_info_fields: Vec<String>,
omit_strand_bias: bool,
omit_read_orientation_bias: bool,
omit_read_position_bias: bool,
omit_softclip_bias: bool,
omit_homopolymer_artifact_detection: bool,
omit_alt_locus_bias: bool,
testcase_locus: Option<String>,
testcase_prefix: Option<String>,
testcase_anonymous: bool,
output: Option<PathBuf>,
log_mode: String,
},
}
Variants§
Variants
Fields
§
mode: VariantCallMode
Trait Implementations§
source§impl<'de> Deserialize<'de> for CallKind
impl<'de> Deserialize<'de> for CallKind
source§fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>where
__D: Deserializer<'de>,
fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>where
__D: Deserializer<'de>,
Deserialize this value from the given Serde deserializer. Read more
source§impl StructOpt for CallKind
impl StructOpt for CallKind
source§fn from_clap(matches: &ArgMatches<'_>) -> Self
fn from_clap(matches: &ArgMatches<'_>) -> Self
Builds the struct from
clap::ArgMatches
. It’s guaranteed to succeed
if matches
originates from an App
generated by StructOpt::clap
called on
the same type, otherwise it must panic.source§fn from_args() -> Selfwhere
Self: Sized,
fn from_args() -> Selfwhere
Self: Sized,
Builds the struct from the command line arguments (
std::env::args_os
).
Calls clap::Error::exit
on failure, printing the error message and aborting the program.source§fn from_args_safe() -> Result<Self, Error>where
Self: Sized,
fn from_args_safe() -> Result<Self, Error>where
Self: Sized,
Builds the struct from the command line arguments (
std::env::args_os
).
Unlike StructOpt::from_args
, returns clap::Error
on failure instead of aborting the program,
so calling .exit
is up to you.source§fn from_iter<I>(iter: I) -> Selfwhere
Self: Sized,
I: IntoIterator,
<I as IntoIterator>::Item: Into<OsString> + Clone,
fn from_iter<I>(iter: I) -> Selfwhere
Self: Sized,
I: IntoIterator,
<I as IntoIterator>::Item: Into<OsString> + Clone,
Gets the struct from any iterator such as a
Vec
of your making.
Print the error message and quit the program in case of failure. Read moresource§fn from_iter_safe<I>(iter: I) -> Result<Self, Error>where
Self: Sized,
I: IntoIterator,
<I as IntoIterator>::Item: Into<OsString> + Clone,
fn from_iter_safe<I>(iter: I) -> Result<Self, Error>where
Self: Sized,
I: IntoIterator,
<I as IntoIterator>::Item: Into<OsString> + Clone,
Gets the struct from any iterator such as a
Vec
of your making. Read moreAuto Trait Implementations§
impl RefUnwindSafe for CallKind
impl Send for CallKind
impl Sync for CallKind
impl Unpin for CallKind
impl UnwindSafe for CallKind
Blanket Implementations§
§impl<T> Pointable for T
impl<T> Pointable for T
§impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,
impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,
§fn to_subset(&self) -> Option<SS>
fn to_subset(&self) -> Option<SS>
The inverse inclusion map: attempts to construct
self
from the equivalent element of its
superset. Read more§fn is_in_subset(&self) -> bool
fn is_in_subset(&self) -> bool
Checks if
self
is actually part of its subset T
(and can be converted to it).§fn to_subset_unchecked(&self) -> SS
fn to_subset_unchecked(&self) -> SS
Use with care! Same as
self.to_subset
but without any property checks. Always succeeds.§fn from_subset(element: &SS) -> SP
fn from_subset(element: &SS) -> SP
The inclusion map: converts
self
to the equivalent element of its superset.