Enum varlociraptor::cli::Varlociraptor
source · [−]pub enum Varlociraptor {
Preprocess {
kind: PreprocessKind,
},
Call {
kind: CallKind,
},
FilterCalls {
method: FilterMethod,
},
DecodePHRED,
Estimate {
kind: EstimateKind,
},
Plot {
kind: PlotKind,
},
Genotype,
}
Variants
Preprocess
Fields
kind: PreprocessKind
Call
Fields
kind: CallKind
FilterCalls
Fields
method: FilterMethod
DecodePHRED
Estimate
Fields
kind: EstimateKind
Plot
Fields
kind: PlotKind
Genotype
Trait Implementations
sourceimpl Clone for Varlociraptor
impl Clone for Varlociraptor
sourcefn clone(&self) -> Varlociraptor
fn clone(&self) -> Varlociraptor
Returns a copy of the value. Read more
1.0.0 · sourcefn clone_from(&mut self, source: &Self)
fn clone_from(&mut self, source: &Self)
Performs copy-assignment from source
. Read more
sourceimpl Debug for Varlociraptor
impl Debug for Varlociraptor
sourceimpl Default for Varlociraptor
impl Default for Varlociraptor
sourceimpl<'de> Deserialize<'de> for Varlociraptor
impl<'de> Deserialize<'de> for Varlociraptor
sourcefn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
__D: Deserializer<'de>,
fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
__D: Deserializer<'de>,
Deserialize this value from the given Serde deserializer. Read more
sourceimpl Serialize for Varlociraptor
impl Serialize for Varlociraptor
sourceimpl StructOpt for Varlociraptor
impl StructOpt for Varlociraptor
sourcefn from_clap(matches: &ArgMatches<'_>) -> Self
fn from_clap(matches: &ArgMatches<'_>) -> Self
Builds the struct from clap::ArgMatches
. It’s guaranteed to succeed
if matches
originates from an App
generated by StructOpt::clap
called on
the same type, otherwise it must panic. Read more
sourcefn from_args() -> Self
fn from_args() -> Self
Builds the struct from the command line arguments (std::env::args_os
).
Calls clap::Error::exit
on failure, printing the error message and aborting the program. Read more
sourcefn from_args_safe() -> Result<Self, Error>
fn from_args_safe() -> Result<Self, Error>
Builds the struct from the command line arguments (std::env::args_os
).
Unlike StructOpt::from_args
, returns clap::Error
on failure instead of aborting the program,
so calling .exit
is up to you. Read more
sourcefn from_iter<I>(iter: I) -> Self where
I: IntoIterator,
<I as IntoIterator>::Item: Into<OsString>,
<I as IntoIterator>::Item: Clone,
fn from_iter<I>(iter: I) -> Self where
I: IntoIterator,
<I as IntoIterator>::Item: Into<OsString>,
<I as IntoIterator>::Item: Clone,
Gets the struct from any iterator such as a Vec
of your making.
Print the error message and quit the program in case of failure. Read more
sourcefn from_iter_safe<I>(iter: I) -> Result<Self, Error> where
I: IntoIterator,
<I as IntoIterator>::Item: Into<OsString>,
<I as IntoIterator>::Item: Clone,
fn from_iter_safe<I>(iter: I) -> Result<Self, Error> where
I: IntoIterator,
<I as IntoIterator>::Item: Into<OsString>,
<I as IntoIterator>::Item: Clone,
Gets the struct from any iterator such as a Vec
of your making. Read more
Auto Trait Implementations
impl RefUnwindSafe for Varlociraptor
impl Send for Varlociraptor
impl Sync for Varlociraptor
impl Unpin for Varlociraptor
impl UnwindSafe for Varlociraptor
Blanket Implementations
sourceimpl<T> BorrowMut<T> for T where
T: ?Sized,
impl<T> BorrowMut<T> for T where
T: ?Sized,
const: unstable · sourcepub fn borrow_mut(&mut self) -> &mut T
pub fn borrow_mut(&mut self) -> &mut T
Mutably borrows from an owned value. Read more
impl<T> FmtForward for T
impl<T> FmtForward for T
fn fmt_binary(self) -> FmtBinary<Self> where
Self: Binary,
fn fmt_binary(self) -> FmtBinary<Self> where
Self: Binary,
Causes self
to use its Binary
implementation when Debug
-formatted.
fn fmt_display(self) -> FmtDisplay<Self> where
Self: Display,
fn fmt_display(self) -> FmtDisplay<Self> where
Self: Display,
Causes self
to use its Display
implementation when
Debug
-formatted. Read more
fn fmt_lower_exp(self) -> FmtLowerExp<Self> where
Self: LowerExp,
fn fmt_lower_exp(self) -> FmtLowerExp<Self> where
Self: LowerExp,
Causes self
to use its LowerExp
implementation when
Debug
-formatted. Read more
fn fmt_lower_hex(self) -> FmtLowerHex<Self> where
Self: LowerHex,
fn fmt_lower_hex(self) -> FmtLowerHex<Self> where
Self: LowerHex,
Causes self
to use its LowerHex
implementation when
Debug
-formatted. Read more
fn fmt_octal(self) -> FmtOctal<Self> where
Self: Octal,
fn fmt_octal(self) -> FmtOctal<Self> where
Self: Octal,
Causes self
to use its Octal
implementation when Debug
-formatted.
fn fmt_pointer(self) -> FmtPointer<Self> where
Self: Pointer,
fn fmt_pointer(self) -> FmtPointer<Self> where
Self: Pointer,
Causes self
to use its Pointer
implementation when
Debug
-formatted. Read more
fn fmt_upper_exp(self) -> FmtUpperExp<Self> where
Self: UpperExp,
fn fmt_upper_exp(self) -> FmtUpperExp<Self> where
Self: UpperExp,
Causes self
to use its UpperExp
implementation when
Debug
-formatted. Read more
fn fmt_upper_hex(self) -> FmtUpperHex<Self> where
Self: UpperHex,
fn fmt_upper_hex(self) -> FmtUpperHex<Self> where
Self: UpperHex,
Causes self
to use its UpperHex
implementation when
Debug
-formatted. Read more
impl<T> Pipe for T where
T: ?Sized,
impl<T> Pipe for T where
T: ?Sized,
fn pipe<R>(self, func: impl FnOnce(Self) -> R) -> R
fn pipe<R>(self, func: impl FnOnce(Self) -> R) -> R
Pipes by value. This is generally the method you want to use. Read more
fn pipe_ref<'a, R>(&'a self, func: impl FnOnce(&'a Self) -> R) -> R where
R: 'a,
fn pipe_ref<'a, R>(&'a self, func: impl FnOnce(&'a Self) -> R) -> R where
R: 'a,
Borrows self
and passes that borrow into the pipe function. Read more
fn pipe_ref_mut<'a, R>(&'a mut self, func: impl FnOnce(&'a mut Self) -> R) -> R where
R: 'a,
fn pipe_ref_mut<'a, R>(&'a mut self, func: impl FnOnce(&'a mut Self) -> R) -> R where
R: 'a,
Mutably borrows self
and passes that borrow into the pipe function. Read more
fn pipe_borrow<'a, B, R>(&'a self, func: impl FnOnce(&'a B) -> R) -> R where
Self: Borrow<B>,
B: 'a + ?Sized,
R: 'a,
fn pipe_borrow<'a, B, R>(&'a self, func: impl FnOnce(&'a B) -> R) -> R where
Self: Borrow<B>,
B: 'a + ?Sized,
R: 'a,
Borrows self
, then passes self.borrow()
into the pipe function. Read more
fn pipe_borrow_mut<'a, B, R>(
&'a mut self,
func: impl FnOnce(&'a mut B) -> R
) -> R where
Self: BorrowMut<B>,
B: 'a + ?Sized,
R: 'a,
fn pipe_borrow_mut<'a, B, R>(
&'a mut self,
func: impl FnOnce(&'a mut B) -> R
) -> R where
Self: BorrowMut<B>,
B: 'a + ?Sized,
R: 'a,
Mutably borrows self
, then passes self.borrow_mut()
into the pipe
function. Read more
fn pipe_as_ref<'a, U, R>(&'a self, func: impl FnOnce(&'a U) -> R) -> R where
Self: AsRef<U>,
U: 'a + ?Sized,
R: 'a,
fn pipe_as_ref<'a, U, R>(&'a self, func: impl FnOnce(&'a U) -> R) -> R where
Self: AsRef<U>,
U: 'a + ?Sized,
R: 'a,
Borrows self
, then passes self.as_ref()
into the pipe function.
fn pipe_as_mut<'a, U, R>(&'a mut self, func: impl FnOnce(&'a mut U) -> R) -> R where
Self: AsMut<U>,
U: 'a + ?Sized,
R: 'a,
fn pipe_as_mut<'a, U, R>(&'a mut self, func: impl FnOnce(&'a mut U) -> R) -> R where
Self: AsMut<U>,
U: 'a + ?Sized,
R: 'a,
Mutably borrows self
, then passes self.as_mut()
into the pipe
function. Read more
fn pipe_deref<'a, T, R>(&'a self, func: impl FnOnce(&'a T) -> R) -> R where
Self: Deref<Target = T>,
T: 'a + ?Sized,
R: 'a,
fn pipe_deref<'a, T, R>(&'a self, func: impl FnOnce(&'a T) -> R) -> R where
Self: Deref<Target = T>,
T: 'a + ?Sized,
R: 'a,
Borrows self
, then passes self.deref()
into the pipe function.
impl<T> PipeAsRef for T
impl<T> PipeAsRef for T
fn pipe_as_ref<'a, T, R>(&'a self, func: impl FnOnce(&'a T) -> R) -> R where
Self: AsRef<T>,
T: 'a,
R: 'a,
fn pipe_as_ref<'a, T, R>(&'a self, func: impl FnOnce(&'a T) -> R) -> R where
Self: AsRef<T>,
T: 'a,
R: 'a,
Pipes a trait borrow into a function that cannot normally be called in suffix position. Read more
fn pipe_as_mut<'a, T, R>(&'a mut self, func: impl FnOnce(&'a mut T) -> R) -> R where
Self: AsMut<T>,
T: 'a,
R: 'a,
fn pipe_as_mut<'a, T, R>(&'a mut self, func: impl FnOnce(&'a mut T) -> R) -> R where
Self: AsMut<T>,
T: 'a,
R: 'a,
Pipes a trait mutable borrow into a function that cannot normally be called in suffix position. Read more
impl<T> PipeBorrow for T
impl<T> PipeBorrow for T
fn pipe_borrow<'a, T, R>(&'a self, func: impl FnOnce(&'a T) -> R) -> R where
Self: Borrow<T>,
T: 'a,
R: 'a,
fn pipe_borrow<'a, T, R>(&'a self, func: impl FnOnce(&'a T) -> R) -> R where
Self: Borrow<T>,
T: 'a,
R: 'a,
Pipes a trait borrow into a function that cannot normally be called in suffix position. Read more
fn pipe_borrow_mut<'a, T, R>(
&'a mut self,
func: impl FnOnce(&'a mut T) -> R
) -> R where
Self: BorrowMut<T>,
T: 'a,
R: 'a,
fn pipe_borrow_mut<'a, T, R>(
&'a mut self,
func: impl FnOnce(&'a mut T) -> R
) -> R where
Self: BorrowMut<T>,
T: 'a,
R: 'a,
Pipes a trait mutable borrow into a function that cannot normally be called in suffix position. Read more
impl<T> PipeDeref for T
impl<T> PipeDeref for T
fn pipe_deref<'a, R>(&'a self, func: impl FnOnce(&'a Self::Target) -> R) -> R where
Self: Deref,
R: 'a,
fn pipe_deref<'a, R>(&'a self, func: impl FnOnce(&'a Self::Target) -> R) -> R where
Self: Deref,
R: 'a,
Pipes a dereference into a function that cannot normally be called in suffix position. Read more
fn pipe_deref_mut<'a, R>(
&'a mut self,
func: impl FnOnce(&'a mut Self::Target) -> R
) -> R where
Self: DerefMut,
R: 'a,
fn pipe_deref_mut<'a, R>(
&'a mut self,
func: impl FnOnce(&'a mut Self::Target) -> R
) -> R where
Self: DerefMut,
R: 'a,
Pipes a mutable dereference into a function that cannot normally be called in suffix position. Read more
impl<T> PipeRef for T
impl<T> PipeRef for T
impl<T> Pointable for T
impl<T> Pointable for T
impl<SS, SP> SupersetOf<SS> for SP where
SS: SubsetOf<SP>,
impl<SS, SP> SupersetOf<SS> for SP where
SS: SubsetOf<SP>,
pub fn to_subset(&self) -> Option<SS>
pub fn to_subset(&self) -> Option<SS>
The inverse inclusion map: attempts to construct self
from the equivalent element of its
superset. Read more
pub fn is_in_subset(&self) -> bool
pub fn is_in_subset(&self) -> bool
Checks if self
is actually part of its subset T
(and can be converted to it).
pub fn to_subset_unchecked(&self) -> SS
pub fn to_subset_unchecked(&self) -> SS
Use with care! Same as self.to_subset
but without any property checks. Always succeeds.
pub fn from_subset(element: &SS) -> SP
pub fn from_subset(element: &SS) -> SP
The inclusion map: converts self
to the equivalent element of its superset.
impl<T> Tap for T
impl<T> Tap for T
fn tap_borrow<B>(self, func: impl FnOnce(&B)) -> Self where
Self: Borrow<B>,
B: ?Sized,
fn tap_borrow<B>(self, func: impl FnOnce(&B)) -> Self where
Self: Borrow<B>,
B: ?Sized,
Immutable access to the Borrow<B>
of a value. Read more
fn tap_borrow_mut<B>(self, func: impl FnOnce(&mut B)) -> Self where
Self: BorrowMut<B>,
B: ?Sized,
fn tap_borrow_mut<B>(self, func: impl FnOnce(&mut B)) -> Self where
Self: BorrowMut<B>,
B: ?Sized,
Mutable access to the BorrowMut<B>
of a value. Read more
fn tap_ref<R>(self, func: impl FnOnce(&R)) -> Self where
Self: AsRef<R>,
R: ?Sized,
fn tap_ref<R>(self, func: impl FnOnce(&R)) -> Self where
Self: AsRef<R>,
R: ?Sized,
Immutable access to the AsRef<R>
view of a value. Read more
fn tap_ref_mut<R>(self, func: impl FnOnce(&mut R)) -> Self where
Self: AsMut<R>,
R: ?Sized,
fn tap_ref_mut<R>(self, func: impl FnOnce(&mut R)) -> Self where
Self: AsMut<R>,
R: ?Sized,
Mutable access to the AsMut<R>
view of a value. Read more
fn tap_deref<T>(self, func: impl FnOnce(&T)) -> Self where
Self: Deref<Target = T>,
T: ?Sized,
fn tap_deref<T>(self, func: impl FnOnce(&T)) -> Self where
Self: Deref<Target = T>,
T: ?Sized,
Immutable access to the Deref::Target
of a value. Read more
fn tap_deref_mut<T>(self, func: impl FnOnce(&mut T)) -> Self where
Self: DerefMut<Target = T> + Deref,
T: ?Sized,
fn tap_deref_mut<T>(self, func: impl FnOnce(&mut T)) -> Self where
Self: DerefMut<Target = T> + Deref,
T: ?Sized,
Mutable access to the Deref::Target
of a value. Read more
fn tap_dbg(self, func: impl FnOnce(&Self)) -> Self
fn tap_dbg(self, func: impl FnOnce(&Self)) -> Self
Calls .tap()
only in debug builds, and is erased in release builds.
fn tap_mut_dbg(self, func: impl FnOnce(&mut Self)) -> Self
fn tap_mut_dbg(self, func: impl FnOnce(&mut Self)) -> Self
Calls .tap_mut()
only in debug builds, and is erased in release
builds. Read more
fn tap_borrow_dbg<B>(self, func: impl FnOnce(&B)) -> Self where
Self: Borrow<B>,
B: ?Sized,
fn tap_borrow_dbg<B>(self, func: impl FnOnce(&B)) -> Self where
Self: Borrow<B>,
B: ?Sized,
Calls .tap_borrow()
only in debug builds, and is erased in release
builds. Read more
fn tap_borrow_mut_dbg<B>(self, func: impl FnOnce(&mut B)) -> Self where
Self: BorrowMut<B>,
B: ?Sized,
fn tap_borrow_mut_dbg<B>(self, func: impl FnOnce(&mut B)) -> Self where
Self: BorrowMut<B>,
B: ?Sized,
Calls .tap_borrow_mut()
only in debug builds, and is erased in release
builds. Read more
fn tap_ref_dbg<R>(self, func: impl FnOnce(&R)) -> Self where
Self: AsRef<R>,
R: ?Sized,
fn tap_ref_dbg<R>(self, func: impl FnOnce(&R)) -> Self where
Self: AsRef<R>,
R: ?Sized,
Calls .tap_ref()
only in debug builds, and is erased in release
builds. Read more
fn tap_ref_mut_dbg<R>(self, func: impl FnOnce(&mut R)) -> Self where
Self: AsMut<R>,
R: ?Sized,
fn tap_ref_mut_dbg<R>(self, func: impl FnOnce(&mut R)) -> Self where
Self: AsMut<R>,
R: ?Sized,
Calls .tap_ref_mut()
only in debug builds, and is erased in release
builds. Read more
impl<T> Tap for T
impl<T> Tap for T
fn tap<F, R>(self, func: F) -> Self where
F: FnOnce(&Self) -> R,
fn tap<F, R>(self, func: F) -> Self where
F: FnOnce(&Self) -> R,
Provides immutable access for inspection. Read more
fn tap_dbg<F, R>(self, func: F) -> Self where
F: FnOnce(&Self) -> R,
fn tap_dbg<F, R>(self, func: F) -> Self where
F: FnOnce(&Self) -> R,
Calls tap
in debug builds, and does nothing in release builds.
fn tap_mut<F, R>(self, func: F) -> Self where
F: FnOnce(&mut Self) -> R,
fn tap_mut<F, R>(self, func: F) -> Self where
F: FnOnce(&mut Self) -> R,
Provides mutable access for modification. Read more
fn tap_mut_dbg<F, R>(self, func: F) -> Self where
F: FnOnce(&mut Self) -> R,
fn tap_mut_dbg<F, R>(self, func: F) -> Self where
F: FnOnce(&mut Self) -> R,
Calls tap_mut
in debug builds, and does nothing in release builds.
impl<T, U> TapAsRef<U> for T where
U: ?Sized,
impl<T, U> TapAsRef<U> for T where
U: ?Sized,
fn tap_ref<F, R>(self, func: F) -> Self where
Self: AsRef<T>,
F: FnOnce(&T) -> R,
fn tap_ref<F, R>(self, func: F) -> Self where
Self: AsRef<T>,
F: FnOnce(&T) -> R,
Provides immutable access to the reference for inspection.
fn tap_ref_dbg<F, R>(self, func: F) -> Self where
Self: AsRef<T>,
F: FnOnce(&T) -> R,
fn tap_ref_dbg<F, R>(self, func: F) -> Self where
Self: AsRef<T>,
F: FnOnce(&T) -> R,
Calls tap_ref
in debug builds, and does nothing in release builds.
fn tap_ref_mut<F, R>(self, func: F) -> Self where
Self: AsMut<T>,
F: FnOnce(&mut T) -> R,
fn tap_ref_mut<F, R>(self, func: F) -> Self where
Self: AsMut<T>,
F: FnOnce(&mut T) -> R,
Provides mutable access to the reference for modification.
fn tap_ref_mut_dbg<F, R>(self, func: F) -> Self where
Self: AsMut<T>,
F: FnOnce(&mut T) -> R,
fn tap_ref_mut_dbg<F, R>(self, func: F) -> Self where
Self: AsMut<T>,
F: FnOnce(&mut T) -> R,
Calls tap_ref_mut
in debug builds, and does nothing in release builds.
impl<T, U> TapBorrow<U> for T where
U: ?Sized,
impl<T, U> TapBorrow<U> for T where
U: ?Sized,
fn tap_borrow<F, R>(self, func: F) -> Self where
Self: Borrow<T>,
F: FnOnce(&T) -> R,
fn tap_borrow<F, R>(self, func: F) -> Self where
Self: Borrow<T>,
F: FnOnce(&T) -> R,
Provides immutable access to the borrow for inspection. Read more
fn tap_borrow_dbg<F, R>(self, func: F) -> Self where
Self: Borrow<T>,
F: FnOnce(&T) -> R,
fn tap_borrow_dbg<F, R>(self, func: F) -> Self where
Self: Borrow<T>,
F: FnOnce(&T) -> R,
Calls tap_borrow
in debug builds, and does nothing in release builds.
fn tap_borrow_mut<F, R>(self, func: F) -> Self where
Self: BorrowMut<T>,
F: FnOnce(&mut T) -> R,
fn tap_borrow_mut<F, R>(self, func: F) -> Self where
Self: BorrowMut<T>,
F: FnOnce(&mut T) -> R,
Provides mutable access to the borrow for modification.
fn tap_borrow_mut_dbg<F, R>(self, func: F) -> Self where
Self: BorrowMut<T>,
F: FnOnce(&mut T) -> R,
fn tap_borrow_mut_dbg<F, R>(self, func: F) -> Self where
Self: BorrowMut<T>,
F: FnOnce(&mut T) -> R,
Calls tap_borrow_mut
in debug builds, and does nothing in release
builds. Read more
impl<T> TapDeref for T
impl<T> TapDeref for T
fn tap_deref<F, R>(self, func: F) -> Self where
Self: Deref,
F: FnOnce(&Self::Target) -> R,
fn tap_deref<F, R>(self, func: F) -> Self where
Self: Deref,
F: FnOnce(&Self::Target) -> R,
Immutably dereferences self
for inspection.
fn tap_deref_dbg<F, R>(self, func: F) -> Self where
Self: Deref,
F: FnOnce(&Self::Target) -> R,
fn tap_deref_dbg<F, R>(self, func: F) -> Self where
Self: Deref,
F: FnOnce(&Self::Target) -> R,
Calls tap_deref
in debug builds, and does nothing in release builds.
fn tap_deref_mut<F, R>(self, func: F) -> Self where
Self: DerefMut,
F: FnOnce(&mut Self::Target) -> R,
fn tap_deref_mut<F, R>(self, func: F) -> Self where
Self: DerefMut,
F: FnOnce(&mut Self::Target) -> R,
Mutably dereferences self
for modification.
fn tap_deref_mut_dbg<F, R>(self, func: F) -> Self where
Self: DerefMut,
F: FnOnce(&mut Self::Target) -> R,
fn tap_deref_mut_dbg<F, R>(self, func: F) -> Self where
Self: DerefMut,
F: FnOnce(&mut Self::Target) -> R,
Calls tap_deref_mut
in debug builds, and does nothing in release
builds. Read more
sourceimpl<T> ToOwned for T where
T: Clone,
impl<T> ToOwned for T where
T: Clone,
type Owned = T
type Owned = T
The resulting type after obtaining ownership.
sourcepub fn to_owned(&self) -> T
pub fn to_owned(&self) -> T
Creates owned data from borrowed data, usually by cloning. Read more
sourcepub fn clone_into(&self, target: &mut T)
pub fn clone_into(&self, target: &mut T)
toowned_clone_into
)Uses borrowed data to replace owned data, usually by cloning. Read more