Struct NodeData

pub struct NodeData {
    pub id: BString,
    pub reference_id: BString,
    pub strand: Strand,
    pub exons: Exons,
    pub reads: Vec<ReadData>,
    pub sequence: Option<BString>,
    pub attributes: HashMap<BString, Attribute>,
}

Node in the transcript segment graph

Fields

id: BString

reference_id: BString

strand: Strand

exons: Exons

reads: Vec<ReadData>

sequence: Option<BString>

attributes: HashMap<BString, Attribute>

Implementations

impl NodeData

pub fn builder() -> NodeDataBuilder

Create an instance of NodeData using the builder syntax

impl NodeData

pub fn reference_start(&self) -> usize

pub fn reference_end(&self) -> usize

pub fn to_json(&self, attributes: Option<&[Attribute]>) -> Result<Value>

Converts the node data to a JSON representation

Arguments

• attributes - Optional additional attributes to include in the JSON

Returns

A JSON value representing the node

pub fn to_gtf(&self, attributes: Option<&[Attribute]>) -> Result<BString>

Trait Implementations

impl Clone for NodeData

fn clone(&self) -> NodeData

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for NodeData

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for NodeData

fn default() -> NodeData

Returns the “default value” for a type.

impl Display for NodeData

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromStr for NodeData

type Err = Error

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.