Struct StructuralVariant 

pub struct StructuralVariant {
    pub reference_name1: BString,
    pub reference_name2: BString,
    pub breakpoint1: usize,
    pub breakpoint2: usize,
    pub sv_type: BString,
}

Represents a structural variant in a genomic sequence.

A structural variant describes a genomic rearrangement between two locations, potentially on different reference sequences.

Fields

• reference_name1 - The name of the first reference sequence.
• reference_name2 - The name of the second reference sequence.
• breakpoint1 - The position on the first reference sequence where the variant occurs.
• breakpoint2 - The position on the second reference sequence where the variant occurs.
• sv_type - The type of structural variant (e.g., “DEL”, “INV”, “DUP”, “TRA”).

Examples

use bstr::BString;
use tsg_core::graph::StructuralVariant;

let sv = StructuralVariant {
    reference_name1: BString::from("chr1"),
    reference_name2: BString::from("chr1"),
    breakpoint1: 1000,
    breakpoint2: 5000,
    sv_type: BString::from("DEL"),
};

let sv_from_builder = StructuralVariant::builder()
   .reference_name1("chr1")
   .reference_name2("chr1")
   .breakpoint1(1000)
   .breakpoint2(5000)
   .sv_type(BString::from("DEL"))
   .build();

Fields

reference_name1: BString

reference_name2: BString

breakpoint1: usize

breakpoint2: usize

sv_type: BString

Implementations

impl StructuralVariant

pub fn builder() -> StructuralVariantBuilder

Create an instance of StructuralVariant using the builder syntax

Trait Implementations

impl Clone for StructuralVariant

fn clone(&self) -> StructuralVariant

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for StructuralVariant

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for StructuralVariant

fn default() -> StructuralVariant

Returns the “default value” for a type.

impl Display for StructuralVariant

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromStr for StructuralVariant

type Err = Error

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.