Struct BioTokenizerConfig 

pub struct BioTokenizerConfig {
    pub max_length: Option<usize>,
    pub include_special_tokens: bool,
    pub tokenize_dna: bool,
    pub tokenize_rna: bool,
    pub tokenize_proteins: bool,
    pub kmer_size: Option<usize>,
    pub overlapping_kmers: bool,
    pub preserve_case: bool,
    pub handle_ambiguous: bool,
    pub tokenize_structure: bool,
    pub vocab_size: Option<usize>,
}

Configuration for biological sequence tokenizer

Fields

max_length: Option<usize>

Maximum sequence length

include_special_tokens: bool

Whether to include special bio tokens

tokenize_dna: bool

Whether to tokenize DNA sequences

tokenize_rna: bool

Whether to tokenize RNA sequences

tokenize_proteins: bool

Whether to tokenize protein sequences

kmer_size: Option<usize>

K-mer size for subsequence tokenization

overlapping_kmers: bool

Whether to use overlapping k-mers

preserve_case: bool

Whether to preserve case (for mixed case sequences)

handle_ambiguous: bool

Whether to handle ambiguous nucleotides/amino acids

tokenize_structure: bool

Whether to tokenize secondary structure annotations

vocab_size: Option<usize>

Vocabulary size limit

Trait Implementations

impl Clone for BioTokenizerConfig

fn clone(&self) -> BioTokenizerConfig

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for BioTokenizerConfig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for BioTokenizerConfig

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for BioTokenizerConfig

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for BioTokenizerConfig

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.