Struct trfr::Record

pub struct Record {

    pub seq_id: String,
    pub start: usize,
    pub end: usize,
    pub period: u16,
    pub copy_number: f32,
    pub consensus_pattern_size: u16,
    pub perc_matches: u8,
    pub perc_indels: u8,
    pub alignment_score: u32,
    pub perc_a: u8,
    pub perc_c: u8,
    pub perc_g: u8,
    pub perc_t: u8,
    pub entropy: f32,
    pub consensus_pattern: String,
    pub repeat_seq: String,
}

The record fields in a trf table

Fields

seq_id: String

The name of the fasta record

start: usize

Start index of the repeat

end: usize

End index of the repeat

period: u16

The period of the repeat

copy_number: f32

Number of copies aligned with the consensus pattern

consensus_pattern_size: u16

Size of consensus pattern (may differ slightly from the period size).

perc_matches: u8

Percent of matches between adjacent copies overall

perc_indels: u8

Percent of indels between adjacent copies overall

alignment_score: u32

Alignment score

perc_a: u8

Percentages of the nucleotides

perc_c: u8

perc_g: u8

perc_t: u8

entropy: f32

Entropy measure based on percent composition

consensus_pattern: String

The repeat pattern itself

repeat_seq: String

The longer repeat sequence extracted from the reads

Trait Implementations

impl Debug for Record

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Record

fn default() -> Record

Returns the “default value” for a type.

impl PartialEq for Record

fn eq(&self, other: &Record) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for Record