Crate transcriptomic_rs 

transcriptomic-rs

Expression matrix assembly and normalization → Arrow RecordBatches.

Quick start

use geo_soft_rs::SoftReader;
use transcriptomic_rs::MatrixBuilder;

let reader = SoftReader::open("GSE65682_family.soft.gz")?;
let matrix = MatrixBuilder::new().from_soft(reader)?;
let normalized = transcriptomic_rs::Normalize::log2(&matrix);

Re-exports

pub use error::Error;

pub use error::Result;

pub use matrix::AggregationMethod;

pub use matrix::ExpressionMatrix;

pub use matrix::GeneValues;

pub use matrix::MatrixBuilder;

pub use matrix::MatrixConfig;

pub use matrix::PlatformAnnotation;

pub use matrix::SampleMetadata;

pub use normalization::Normalize;

Modules

error

Error types for transcriptomic-rs

matrix

Expression matrix structures and builders

normalization

Normalization methods for expression matrices