Struct NucleotideVariant 

pub struct NucleotideVariant {
    pub location: Interval<NucleotideCoordinate>,
    pub edit: NucleotideEdit,
}

Parsed nucleotide location and edit.

Examples

use tinyhgvs::{NucleotideEdit, VariantDescription, parse_hgvs};

let variant = parse_hgvs("NM_004006.2:c.357+1G>A").unwrap();

match variant.description {
    VariantDescription::Nucleotide(description) => {
        assert!(matches!(
            description.edit,
            NucleotideEdit::Substitution { ref reference, ref alternate }
                if reference == "G" && alternate == "A"
        ));
        assert_eq!(description.location.start.coordinate, 357);
        assert_eq!(description.location.start.offset, 1);
    }
    VariantDescription::Protein(_) => unreachable!("expected nucleotide variant"),
}

Fields

location: Interval<NucleotideCoordinate>

edit: NucleotideEdit

Trait Implementations

impl Clone for NucleotideVariant

fn clone(&self) -> NucleotideVariant

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for NucleotideVariant

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for NucleotideVariant

fn eq(&self, other: &NucleotideVariant) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for NucleotideVariant

impl StructuralPartialEq for NucleotideVariant