Struct HgvsVariant 

pub struct HgvsVariant {
    pub reference: Option<ReferenceSpec>,
    pub coordinate_system: CoordinateSystem,
    pub description: VariantDescription,
}

A parsed HGVS variant.

This is the root model returned by crate::parse_hgvs. It keeps the reference, coordinate system, and biological description together.

Examples

use tinyhgvs::{CoordinateSystem, VariantDescription, parse_hgvs};

let variant = parse_hgvs("NM_007373.4:c.-1C>T").unwrap();
assert_eq!(variant.coordinate_system, CoordinateSystem::CodingDna);

match variant.description {
    VariantDescription::Nucleotide(description) => {
        assert_eq!(description.location.start.coordinate, -1);
    }
    VariantDescription::Protein(_) => unreachable!("expected nucleotide variant"),
}

Fields

reference: Option<ReferenceSpec>

Reference sequence metadata such as NM_004006.2. Optional for shorthand protein variants such as p.Gly2_Met46del.

coordinate_system: CoordinateSystem

HGVS coordinate type such as c, g, r, or p.

description: VariantDescription

Parsed variant description for nucleotide or protein syntax.

Trait Implementations

impl Clone for HgvsVariant

fn clone(&self) -> HgvsVariant

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for HgvsVariant

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for HgvsVariant

fn eq(&self, other: &HgvsVariant) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for HgvsVariant

impl StructuralPartialEq for HgvsVariant