Struct SmithWaterman 

pub struct SmithWaterman {
    pub gap_cost: isize,
    pub match_cost: isize,
    pub mismatch_cost: isize,
}

Smith-Waterman similarity is edit-based and designed for nucleic acid (and protein) sequences.

Fields

gap_cost: isize

The cost of an alignment gap. Default: 1.

match_cost: isize

The cost of symbols matching. Default: -1.

mismatch_cost: isize

The cost of symbols not matching. Default: 0.

Trait Implementations

impl Algorithm<usize> for SmithWaterman

fn for_vec<E: Eq>(&self, s1: &[E], s2: &[E]) -> Result<usize>

Calculate distance/similarity for vectors.

fn for_iter<C, E>(&self, s1: C, s2: C) -> Result<R>

where C: Iterator<Item = E>, E: Eq + Hash,

Calculate distance/similarity for iterators.

fn for_str(&self, s1: &str, s2: &str) -> Result<R>

Calculate distance/similarity for strings.

fn for_words(&self, s1: &str, s2: &str) -> Result<R>

Calculate distance/similarity for words in strings.

fn for_bigrams(&self, s1: &str, s2: &str) -> Result<R>

Calculate distance/similarity for bigrams in strings.

impl Default for SmithWaterman

fn default() -> Self

Returns the “default value” for a type.