Struct ReadOp 

pub struct ReadOp {
    pub kind: ReadOpKind,
    pub len: u32,
    pub ref_start0: u32,
    pub read_start: u32,
}

One alignment operation with explicit reference/read coordinates.

Fields

kind: ReadOpKind

len: u32

ref_start0: u32

read_start: u32

Implementations

impl ReadOp

pub fn new(kind: ReadOpKind, len: u32, ref_start0: u32, read_start: u32) -> Self

Create a positioned read operation.

pub fn ref_end0(&self) -> u32

Return the exclusive reference end coordinate.

pub fn read_end(&self) -> u32

Return the exclusive read/query end coordinate.

pub fn can_observe_reference_base(&self) -> bool

Return true if this operation can yield a base for a reference position.

pub fn contains_ref_pos(&self, pos0: u32) -> bool

Return true if this operation covers pos0 on the reference.

pub fn read_pos_for_ref_pos(&self, pos0: u32) -> Option<u32>

Map reference coordinate to read coordinate for aligned-base operations.

Trait Implementations

impl Clone for ReadOp

fn clone(&self) -> ReadOp

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ReadOp

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for ReadOp

fn eq(&self, other: &ReadOp) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for ReadOp

impl Eq for ReadOp

impl StructuralPartialEq for ReadOp