List of all items
Structs
- __slow5_press
- __va_list_tag
- kh_slow5_s2a_s
- kh_slow5_s2i_s
- kh_slow5_s2s_s
- kh_slow5_s2ui32_s
- kh_slow5_s_s
- ks_isort_stack_t
- slow5_aux_meta
- slow5_aux_type_meta
- slow5_file
- slow5_file_meta
- slow5_fmt_meta
- slow5_hdr
- slow5_hdr_data
- slow5_hdr_data__bindgen_ty_1
- slow5_idx
- slow5_press
- slow5_press_method_t
- slow5_rec
- slow5_rec_aux_data
- slow5_rec_idx
- slow5_version
- slow5_zlib_stream
Unions
Functions
- slow5_add_rec
- slow5_arr_qts_round
- slow5_asprintf
- slow5_ato_int16
- slow5_ato_int32
- slow5_ato_int64
- slow5_ato_int8
- slow5_ato_uint16
- slow5_ato_uint32
- slow5_ato_uint64
- slow5_ato_uint8
- slow5_aux_add
- slow5_aux_add_enum
- slow5_aux_get_char
- slow5_aux_get_double
- slow5_aux_get_double_array
- slow5_aux_get_enum
- slow5_aux_get_enum_array
- slow5_aux_get_float
- slow5_aux_get_float_array
- slow5_aux_get_int16
- slow5_aux_get_int16_array
- slow5_aux_get_int32
- slow5_aux_get_int32_array
- slow5_aux_get_int64
- slow5_aux_get_int64_array
- slow5_aux_get_int8
- slow5_aux_get_int8_array
- slow5_aux_get_string
- slow5_aux_get_uint16
- slow5_aux_get_uint16_array
- slow5_aux_get_uint32
- slow5_aux_get_uint32_array
- slow5_aux_get_uint64
- slow5_aux_get_uint64_array
- slow5_aux_get_uint8
- slow5_aux_get_uint8_array
- slow5_aux_meta_add
- slow5_aux_meta_add_enum
- slow5_aux_meta_enum_parse
- slow5_aux_meta_free
- slow5_aux_meta_init
- slow5_aux_meta_init_empty
- slow5_aux_set
- slow5_aux_set_string
- slow5_aux_type_to_str
- slow5_close
- slow5_compress_footer_next
- slow5_convert
- slow5_data_to_str
- slow5_decode
- slow5_decode_record_press
- slow5_decode_signal_press
- slow5_double_to_str
- slow5_encode
- slow5_encode_record_press
- slow5_encode_signal_press
- slow5_eof_fwrite
- slow5_errno_location
- slow5_filestamps_cmp
- slow5_float_check
- slow5_fmt_get_name
- slow5_fprintf_compress
- slow5_fread_depress
- slow5_fwrite_compress
- slow5_fwrite_depress
- slow5_get
- slow5_get_aux_enum_labels
- slow5_get_aux_names
- slow5_get_aux_types
- slow5_get_hdr_keys
- slow5_get_idx_path
- slow5_get_mem
- slow5_get_next
- slow5_get_next_bytes
- slow5_get_next_mem
- slow5_get_rids
- slow5_hdr_add
- slow5_hdr_add_attr
- slow5_hdr_add_rg
- slow5_hdr_add_rg_data
- slow5_hdr_attrs_to_str
- slow5_hdr_data_free
- slow5_hdr_data_init
- slow5_hdr_free
- slow5_hdr_fwrite
- slow5_hdr_get
- slow5_hdr_get_data
- slow5_hdr_init
- slow5_hdr_init_empty
- slow5_hdr_set
- slow5_hdr_to_mem
- slow5_hdr_types_to_str
- slow5_hdr_write
- slow5_idx_create
- slow5_idx_free
- slow5_idx_get
- slow5_idx_init
- slow5_idx_init_empty
- slow5_idx_init_with
- slow5_idx_insert
- slow5_idx_load
- slow5_idx_load_with
- slow5_idx_read
- slow5_idx_to
- slow5_idx_unload
- slow5_idx_write
- slow5_init
- slow5_init_empty
- slow5_int_check
- slow5_is_c_label
- slow5_is_eof
- slow5_memcpy_null_type
- slow5_memcpy_type_from_str
- slow5_name_get_fmt
- slow5_open
- slow5_open_with
- slow5_path_get_fmt
- slow5_pread_depress
- slow5_pread_depress_solo
- slow5_press_free
- slow5_press_init
- slow5_printf_compress
- slow5_ptr_compress
- slow5_ptr_compress_solo
- slow5_ptr_depress
- slow5_ptr_depress_solo
- slow5_rec_aux_free
- slow5_rec_depress_parse
- slow5_rec_free
- slow5_rec_fwrite
- slow5_rec_idx_print
- slow5_rec_parse
- slow5_rec_qts_round
- slow5_rec_set
- slow5_rec_set_array
- slow5_rec_to_mem
- slow5_rm_rec
- slow5_set_exit_condition
- slow5_set_log_level
- slow5_set_press
- slow5_set_skip_rid
- slow5_signal_press_version_cmp
- slow5_str_to_aux_type
- slow5_strsep
- slow5_strtod_check
- slow5_strtof_check
- slow5_type_to_str
- slow5_vasprintf
- slow5_version_cmp
- slow5_write
- slow5_write_bytes
Type Aliases
- __builtin_va_list
- __gnuc_va_list
- __int32_t
- __key_t
- key_t
- kh_cstr_t
- kh_slow5_s2a_t
- kh_slow5_s2i_t
- kh_slow5_s2s_t
- kh_slow5_s2ui32_t
- kh_slow5_s_t
- khint32_t
- khint64_t
- khint_t
- khiter_t
- ksstr_t
- slow5_aux_data_t
- slow5_aux_meta_t
- slow5_aux_type
- slow5_cols
- slow5_exit_condition_opt
- slow5_file_meta_t
- slow5_file_t
- slow5_fmt
- slow5_hdr_data_t
- slow5_hdr_t
- slow5_idx_t
- slow5_log_level_opt
- slow5_press_method
- slow5_press_t
- slow5_rec_size_t
- slow5_rec_t
- slow5_rid_len_t
- va_list
Statics
Constants
- SLOW5_ASCII_EXTENSION
- SLOW5_ASCII_MISSING
- SLOW5_ASCII_MISSING_CHAR
- SLOW5_ASCII_NAME
- SLOW5_ASCII_NUM_GROUPS_FORMAT
- SLOW5_BINARY_EXTENSION
- SLOW5_BINARY_HDR_SIZE_OFFSET
- SLOW5_BINARY_NAME
- SLOW5_CHAR_NULL
- SLOW5_COLUMN_HDR_PREFIX
- SLOW5_DEBUG_PREFIX
- SLOW5_ENUM_NULL
- SLOW5_ERROR_PREFIX
- SLOW5_ERR_ARG
- SLOW5_ERR_EOF
- SLOW5_ERR_HDRPARSE
- SLOW5_ERR_IO
- SLOW5_ERR_MAGIC
- SLOW5_ERR_MEM
- SLOW5_ERR_NOAUX
- SLOW5_ERR_NOFLD
- SLOW5_ERR_NOIDX
- SLOW5_ERR_NOTFOUND
- SLOW5_ERR_OTH
- SLOW5_ERR_PRESS
- SLOW5_ERR_RECPARSE
- SLOW5_ERR_TRUNC
- SLOW5_ERR_TYPE
- SLOW5_ERR_UNK
- SLOW5_ERR_VERSION
- SLOW5_FORMAT_STRING_RAW_SIGNAL
- SLOW5_HDR_DATA_PREFIX
- SLOW5_HDR_DATA_PREFIX_CHAR
- SLOW5_HDR_ENUM_LABELS_BEGIN
- SLOW5_HDR_ENUM_LABELS_END
- SLOW5_HDR_FILE_VERSION
- SLOW5_HDR_FILE_VERSION_SEP
- SLOW5_HDR_NUM_GROUPS
- SLOW5_HDR_NUM_GROUPS_INIT
- SLOW5_HDR_PREFIX
- SLOW5_INDEX_EXTENSION
- SLOW5_INDEX_HEADER_SIZE_OFFSET
- SLOW5_INFO_PREFIX
- SLOW5_INT16_T_NULL
- SLOW5_INT32_T_NULL
- SLOW5_INT8_T_NULL
- SLOW5_LIB_VERSION
- SLOW5_NO_COLOUR
- SLOW5_SEP_ARRAY
- SLOW5_SEP_ARRAY_CHAR
- SLOW5_SEP_COL
- SLOW5_SEP_COL_CHAR
- SLOW5_SEP_COL_NAME
- SLOW5_UINT16_T_NULL
- SLOW5_UINT32_T_NULL
- SLOW5_UINT8_T_NULL
- SLOW5_VERBOSE_PREFIX
- SLOW5_VERSION_MAJOR
- SLOW5_VERSION_MINOR
- SLOW5_VERSION_PATCH
- SLOW5_VERSION_STRING
- SLOW5_WARNING_PREFIX
- SLOW5_ZLIB_COMPRESS_CHUNK
- SLOW5_ZLIB_DEPRESS_CHUNK
- SLOW5_ZLIB_MEM_DEFAULT
- SLOW5_ZSTD_COMPRESS_LEVEL
- slow5_aux_type_SLOW5_CHAR
- slow5_aux_type_SLOW5_DOUBLE
- slow5_aux_type_SLOW5_DOUBLE_ARRAY
- slow5_aux_type_SLOW5_ENUM
- slow5_aux_type_SLOW5_ENUM_ARRAY
- slow5_aux_type_SLOW5_FLOAT
- slow5_aux_type_SLOW5_FLOAT_ARRAY
- slow5_aux_type_SLOW5_INT16_T
- slow5_aux_type_SLOW5_INT16_T_ARRAY
- slow5_aux_type_SLOW5_INT32_T
- slow5_aux_type_SLOW5_INT32_T_ARRAY
- slow5_aux_type_SLOW5_INT64_T
- slow5_aux_type_SLOW5_INT64_T_ARRAY
- slow5_aux_type_SLOW5_INT8_T
- slow5_aux_type_SLOW5_INT8_T_ARRAY
- slow5_aux_type_SLOW5_STRING
- slow5_aux_type_SLOW5_UINT16_T
- slow5_aux_type_SLOW5_UINT16_T_ARRAY
- slow5_aux_type_SLOW5_UINT32_T
- slow5_aux_type_SLOW5_UINT32_T_ARRAY
- slow5_aux_type_SLOW5_UINT64_T
- slow5_aux_type_SLOW5_UINT64_T_ARRAY
- slow5_aux_type_SLOW5_UINT8_T
- slow5_aux_type_SLOW5_UINT8_T_ARRAY
- slow5_cols_COL_digitisation
- slow5_cols_COL_len_raw_signal
- slow5_cols_COL_offset
- slow5_cols_COL_range
- slow5_cols_COL_raw_signal
- slow5_cols_COL_read_group
- slow5_cols_COL_read_id
- slow5_cols_COL_sampling_rate
- slow5_cols_SLOW5_COLS_NUM
- slow5_exit_condition_opt_SLOW5_EXIT_OFF
- slow5_exit_condition_opt_SLOW5_EXIT_ON_ERR
- slow5_exit_condition_opt_SLOW5_EXIT_ON_WARN
- slow5_fmt_SLOW5_FORMAT_ASCII
- slow5_fmt_SLOW5_FORMAT_BINARY
- slow5_fmt_SLOW5_FORMAT_UNKNOWN
- slow5_log_level_opt_SLOW5_LOG_DBUG
- slow5_log_level_opt_SLOW5_LOG_ERR
- slow5_log_level_opt_SLOW5_LOG_INFO
- slow5_log_level_opt_SLOW5_LOG_OFF
- slow5_log_level_opt_SLOW5_LOG_VERB
- slow5_log_level_opt_SLOW5_LOG_WARN
- slow5_press_method_SLOW5_COMPRESS_EX_ZD
- slow5_press_method_SLOW5_COMPRESS_NONE
- slow5_press_method_SLOW5_COMPRESS_SVB_ZD
- slow5_press_method_SLOW5_COMPRESS_ZLIB
- slow5_press_method_SLOW5_COMPRESS_ZSTD