Struct InMemoryStorage

pub struct InMemoryStorage { /* private fields */ }

SequenceStorage that stores sequences in memory.

Implementations

impl InMemoryStorage

pub fn get_label_safely(&self, target_index: u32) -> Option<String>

pub fn get_label_ref_safely(&self, target_index: u32) -> Option<&str>

impl InMemoryStorage

pub fn new() -> Self

pub fn add_target(&mut self, label: &str, sequence: &[u8])

pub fn add_fasta<R: Read>(&mut self, reader: R) -> Result<(), Utf8Error>

pub fn fill_fasta_until_max_length<R: Read>( &mut self, reader: R, max_length: u32, ) -> Result<Vec<Self>, Utf8Error>

Get filled storages Each storage has a total length of at most max_length !If one record is longer than max_length, it will be in a storage of its own

pub fn add_gzip_fasta<R: Read>(&mut self, reader: R) -> Result<(), Utf8Error>

pub fn merge(&mut self, other: Self)

pub fn get_sequence_safely(&self, target_index: u32) -> Option<Vec<u8>>

pub fn get_sequence_length_safely(&self, target_index: u32) -> Option<u32>

pub fn get_total_length(&self) -> u32

pub fn remove_labels(&mut self)

Remove all labels !Cannot be undone

pub fn set_sequences_to_uppercase(&mut self)

Set sequence to uppercase !Cannot be undone

pub fn change_bases_to(&mut self, bases_to_change: &[u8], target_base: u8)

Make all designated bases to defined base !Cannot be undone

Trait Implementations

impl Clone for InMemoryStorage

fn clone(&self) -> InMemoryStorage

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for InMemoryStorage

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl EstimateSize for InMemoryStorage

fn serialized_size(&self) -> usize

impl LabelRefStorage for InMemoryStorage

fn label_ref_of_target_unchecked(&self, target_index: u32) -> &str

impl LabelStorage for InMemoryStorage

fn label_of_target_unchecked(&self, target_index: u32) -> String

impl PartialEq for InMemoryStorage

fn eq(&self, other: &InMemoryStorage) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl SequenceStorage for InMemoryStorage

type Buffer = InMemoryBuffer

fn num_targets(&self) -> u32

fn get_buffer(&self) -> Self::Buffer

fn fill_buffer(&self, target_index: u32, buffer: &mut Self::Buffer)

fn get_concatenated_sequence_with_boundaries_of_targets( &self, ) -> (Vec<u8>, Vec<u32>)

impl Serialize for InMemoryStorage

fn save_to<W>(&self, writer: W) -> Result<(), Error>

where W: Write,

fn load_from<R>(reader: R) -> Result<Self, Error>

where R: Read, Self: Sized,

impl Eq for InMemoryStorage

impl StructuralPartialEq for InMemoryStorage