List of all items

Structs

• Bitpacked
• Fasta
• Sequences
• data_types::directory::Directory
• data_types::directory::DirectoryOnDisk
• data_types::header::Headers
• data_types::id::Ids
• data_types::index_directory::IndexDirectory
• data_types::masking::Masking
• data_types::metadata::Metadata
• data_types::parameters::Parameters
• data_types::seq_loc::SeqLoc
• data_types::seq_loc::SeqLocs
• data_types::sequence_block::SequenceBlock
• data_types::sequence_block::SequenceBlockCompressed
• data_types::sequence_block::SequenceBlocks
• data_types::structs::Header
• dual_level_index::dual_index::DualIndex
• dual_level_index::dual_index::DualIndexBuilder
• dual_level_index::dual_index::DualIndexWriter
• prelude::Converter
• prelude::Sfasta
• prelude::SfastaParser

Enums

• Packed
• data_types::seq_loc::Loc
• data_types::structs::CompressionType
• data_types::structs::SeqMode
• dual_level_index::dual_index::Hashes
• masking::ml32bit::Ml32bit

Traits

• data_types::structs::ReadAndSeek
• data_types::structs::ReadAndSeekAndSend
• data_types::structs::T
• data_types::structs::WriteAndSeek

Functions

• bitpack_u32
• capitalize_nucleotides
• check_extension
• complement_nucleotides
• compression::naf_like::can_encode_2bit
• compression::naf_like::can_encode_4bit
• count_fasta_entries
• data_types::sequence_block::zstd_encoder
• data_types::structs::default_compression_level
• generic_open_file
• get_index_filename
• get_masking
• masking::ml32bit::convert_commands_to_u32
• masking::ml32bit::convert_ranges_to_ml32bit
• masking::ml32bit::convert_u32_to_commands
• masking::ml32bit::get_masking_ranges
• masking::ml32bit::get_masking_ranges_previous
• masking::ml32bit::mask_sequence
• masking::ml32bit::pad_commands_to_u32
• masking::ml32bit::parse_ml32bit
• prelude::count_fasta_entries
• prelude::generic_open_file
• prelude::summarize_fasta
• summarize_fasta
• unbitpack_u32