Struct QCTrimArgs 

pub struct QCTrimArgs {
    pub in_fq: String,
    pub q_thershold: Option<u8>,
    pub min_length: Option<usize>,
    pub ascii_base: Option<u8>,
}

Fields

in_fq: String

FASTQ path

q_thershold: Option<u8>

Quality threshold [default: 13]

min_length: Option<usize>

Minimum allowed length for a read after trimming [default: 30]

ascii_base: Option<u8>

Ascii value [default: 33]

Trait Implementations

impl Args for QCTrimArgs

fn group_id() -> Option<Id>

Report the ArgGroup::id for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

impl FromArgMatches for QCTrimArgs

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.