Struct seqrepo::SeqRepo

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pub struct SeqRepo { /* private fields */ }
Expand description

Provide (read-only) access to a seqrepo sequence repository.

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impl SeqRepo

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pub fn new<P>(path: P, instance: &str) -> Result<Self, Error>
where P: AsRef<Path>,

Create new SeqRepo at the given path.

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pub fn root_dir(&self) -> &Path

Provide access to the root directory.

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pub fn instance(&self) -> &str

Provide access to the instance name.

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pub fn alias_db(&self) -> &AliasDb

Provide access to AliasDb.

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pub fn fasta_dir(&self) -> &FastaDir

Provide access to FastaDir.

Trait Implementations§

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impl Debug for SeqRepo

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl Interface for SeqRepo

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fn fetch_sequence_part( &self, alias_or_seq_id: &AliasOrSeqId, begin: Option<usize>, end: Option<usize>, ) -> Result<String, Error>

Fetch part sequence given an alias.
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fn fetch_sequence( &self, alias_or_seq_id: &AliasOrSeqId, ) -> Result<String, Error>

Fetch part sequence given an alias.

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T> Instrument for T

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fn instrument(self, span: Span) -> Instrumented<Self>

Instruments this type with the provided Span, returning an Instrumented wrapper. Read more
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impl<T, U> Into<U> for T
where U: From<T>,

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Calls U::from(self).

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impl<T, U> TryFrom<U> for T
where U: Into<T>,

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type Error = Infallible

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Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

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