Struct SeqRepo

pub struct SeqRepo { /* private fields */ }

Provide (read-only) access to a seqrepo sequence repository.

Implementations

impl SeqRepo

pub fn new<P>(path: P, instance: &str) -> Result<Self, Error>

where P: AsRef<Path>,

Create new SeqRepo at the given path.

pub fn root_dir(&self) -> &Path

Provide access to the root directory.

pub fn instance(&self) -> &str

Provide access to the instance name.

pub fn alias_db(&self) -> &AliasDb

Provide access to AliasDb.

pub fn fasta_dir(&self) -> &FastaDir

Provide access to FastaDir.

Trait Implementations

impl Debug for SeqRepo

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Interface for SeqRepo

fn fetch_sequence_part( &self, alias_or_seq_id: &AliasOrSeqId, begin: Option<usize>, end: Option<usize>, ) -> Result<String, Error>

Fetch part sequence given an alias.

fn fetch_sequence( &self, alias_or_seq_id: &AliasOrSeqId, ) -> Result<String, Error>

Fetch part sequence given an alias.