Struct seqalign::Alignment

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pub struct Alignment<'a, M, T> where
    M: Measure<T>,
    T: Eq, { /* private fields */ }

Expand description

Edit distance cost matrix.

Implementations

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impl<'a, M, T> Alignment<'a, M, T> where
M: Measure<T>,
T: Eq,

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pub fn distance(&self) -> usize

Get the edit distance.

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pub fn edit_script(&self) -> Vec<IndexedOperation<M::Operation>>

Return the script of edit operations to rewrite the source sequence to the target sequence. If there are multiple possible edit scripts, this method will return one of the possible edit scripts. If you want to retrieve all possible edit scripts, use the edit_scripts method.

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pub fn edit_scripts(&self) -> HashSet<Vec<IndexedOperation<M::Operation>>>

Return all the edit scripts to rewrite the source sequence to the target sequence. If you want just one edit script, use the edit_script method instead.

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pub fn cost_matrix(&self) -> &Vec<Vec<usize>>

Get the cost matrix.

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pub fn seq_pair(&self) -> &SeqPair<'_, T>

Get the sequence pair associated with this cost matrix.

Auto Trait Implementations

impl<'a, M, T> RefUnwindSafe for Alignment<'a, M, T> where
M: RefUnwindSafe,
T: RefUnwindSafe,

impl<'a, M, T> Send for Alignment<'a, M, T> where
M: Sync,
T: Sync,

impl<'a, M, T> Sync for Alignment<'a, M, T> where
M: Sync,
T: Sync,

impl<'a, M, T> Unpin for Alignment<'a, M, T>

impl<'a, M, T> UnwindSafe for Alignment<'a, M, T> where
M: RefUnwindSafe,
T: RefUnwindSafe,

Blanket Implementations

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impl<T> Any for T where
T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for T where
T: ?Sized,

const: unstable · source

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for T where
T: ?Sized,

const: unstable · source

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<T> From<T> for T

const: unstable · source

fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into for T where
U: From<T>,

const: unstable · source

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T, U> TryFrom for T where
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

const: unstable · source

fn try_from(value: U) -> Result<T, <T as TryFrom>::Error>

Performs the conversion.

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impl<T, U> TryInto for T where
U: TryFrom<T>,

type Error = >::Error

The type returned in the event of a conversion error.

const: unstable · source

fn try_into(self) -> Result<U, >::Error>

Performs the conversion.

Struct seqalign::Alignment

Implementations

impl<'a, M, T> Alignment<'a, M, T> where
M: Measure<T>,
T: Eq,

pub fn distance(&self) -> usize

pub fn edit_script(&self) -> Vec<IndexedOperation<M::Operation>>

pub fn edit_scripts(&self) -> HashSet<Vec<IndexedOperation<M::Operation>>>

pub fn cost_matrix(&self) -> &Vec<Vec<usize>>

pub fn seq_pair(&self) -> &SeqPair<'_, T>

Auto Trait Implementations

impl<'a, M, T> RefUnwindSafe for Alignment<'a, M, T> where
M: RefUnwindSafe,
T: RefUnwindSafe,

impl<'a, M, T> Send for Alignment<'a, M, T> where
M: Sync,
T: Sync,

impl<'a, M, T> Sync for Alignment<'a, M, T> where
M: Sync,
T: Sync,

impl<'a, M, T> Unpin for Alignment<'a, M, T>

impl<'a, M, T> UnwindSafe for Alignment<'a, M, T> where
M: RefUnwindSafe,
T: RefUnwindSafe,

Blanket Implementations

impl<T> Any for T where
T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for T where
T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for T where
T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<T> From<T> for T

fn from(t: T) -> T

impl<T, U> Into<U> for T where
U: From<T>,

fn into(self) -> U

impl<T, U> TryFrom<U> for T where
U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Struct seqalign::Alignment

Implementations

impl<'a, M, T> Alignment<'a, M, T> where M: Measure<T>, T: Eq,

pub fn distance(&self) -> usize

pub fn edit_script(&self) -> Vec<IndexedOperation<M::Operation>>

pub fn edit_scripts(&self) -> HashSet<Vec<IndexedOperation<M::Operation>>>

pub fn cost_matrix(&self) -> &Vec<Vec<usize>>

pub fn seq_pair(&self) -> &SeqPair<'_, T>

Auto Trait Implementations

impl<'a, M, T> RefUnwindSafe for Alignment<'a, M, T> where M: RefUnwindSafe, T: RefUnwindSafe,

impl<'a, M, T> Send for Alignment<'a, M, T> where M: Sync, T: Sync,

impl<'a, M, T> Sync for Alignment<'a, M, T> where M: Sync, T: Sync,

impl<'a, M, T> Unpin for Alignment<'a, M, T>

impl<'a, M, T> UnwindSafe for Alignment<'a, M, T> where M: RefUnwindSafe, T: RefUnwindSafe,

Blanket Implementations

impl<T> Any for T where T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for T where T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for T where T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<T> From<T> for T

fn from(t: T) -> T

impl<T, U> Into<U> for T where U: From<T>,

fn into(self) -> U

impl<T, U> TryFrom<U> for T where U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for T where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<'a, M, T> Alignment<'a, M, T> where
M: Measure<T>,
T: Eq,

impl<'a, M, T> RefUnwindSafe for Alignment<'a, M, T> where
M: RefUnwindSafe,
T: RefUnwindSafe,

impl<'a, M, T> Send for Alignment<'a, M, T> where
M: Sync,
T: Sync,

impl<'a, M, T> Sync for Alignment<'a, M, T> where
M: Sync,
T: Sync,

impl<'a, M, T> UnwindSafe for Alignment<'a, M, T> where
M: RefUnwindSafe,
T: RefUnwindSafe,

impl<T> Any for T where
T: 'static + ?Sized,

impl<T> Borrow<T> for T where
T: ?Sized,

impl<T> BorrowMut<T> for T where
T: ?Sized,

impl<T, U> Into<U> for T where
U: From<T>,

impl<T, U> TryFrom<U> for T where
U: Into<T>,

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,