Enum seq_io::fastq::Error

pub enum Error {
    Io(Error),
    UnequalLengths {
        seq: usize,
        qual: usize,
        pos: ErrorPosition,
    },
    InvalidStart {
        found: u8,
        pos: ErrorPosition,
    },
    InvalidSep {
        found: u8,
        pos: ErrorPosition,
    },
    UnexpectedEnd {
        pos: ErrorPosition,
    },
    BufferLimit,
}

FASTQ parsing error

Variants

Io(Error)

UnequalLengths

sequence and qualitiy lengths are not equal

Fields of UnequalLengths

seq: usize

Length of sequence

qual: usize

Length of qualities

pos: ErrorPosition

Position within file. ErrorPosition::line has the position of the header, not sequence/qualities

InvalidStart

Invalid start byte encountered (expected @)

Fields of InvalidStart

found: u8

Byte found instead.

pos: ErrorPosition

Position within file. ErrorPosition::id will be None.

InvalidSep

Invalid separator byte encountered (expected +)

Fields of InvalidSep

found: u8

Byte found instead.

pos: ErrorPosition

Position within file

UnexpectedEnd

Truncated record found

Fields of UnexpectedEnd

pos: ErrorPosition

Position within file.

BufferLimit

Size limit of buffer was reached, which happens if policy::BufPolicy::grow_to() returned None. This does not happen with the default struct.DoubleUntil.html policy.

Trait Implementations

impl Debug for Error

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for Error

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Error for Error

fn source(&self) -> Option<&(dyn StdError + 'static)>

The lower-level source of this error, if any.

fn backtrace(&self) -> Option<&Backtrace>

🔬 This is a nightly-only experimental API. (backtrace)

Returns a stack backtrace, if available, of where this error occurred.

fn description(&self) -> &str

👎 Deprecated since 1.42.0:

use the Display impl or to_string()

fn cause(&self) -> Option<&dyn Error>

👎 Deprecated since 1.33.0:

replaced by Error::source, which can support downcasting

impl From<Error> for Error

fn from(e: Error) -> Error

Performs the conversion.