ExtractSegment

seq_here::extract

Struct ExtractSegment

pub struct ExtractSegment;

Expand description

Extract specific segments from biological sequence files

Implementations§

impl ExtractSegment

pub fn extract_id( paths: Vec<PathBuf>, id: String, output: PathBuf, start: Option<usize>, end: Option<usize>, )

Extract sequences that match a single ID

§Arguments

paths - Input sequence files (FASTA, FASTQ, GFF)
id - Sequence identifier to extract
output - Output file path
start - Optional start position (0-based) for the extracted segment
end - Optional end position (0-based, exclusive) for the extracted segment

pub fn extract_id_files( paths: Vec<PathBuf>, id_file: PathBuf, output: PathBuf, start: Option<usize>, end: Option<usize>, )

Extract sequences matching IDs from a file

§Arguments

paths - Input sequence files (FASTA, FASTQ, GFF)
id_file - File containing IDs to extract (one per line)
output - Output file path
start - Optional start position (0-based) for the extracted segment
end - Optional end position (0-based, exclusive) for the extracted segment

Auto Trait Implementations§

impl Freeze for ExtractSegment

impl RefUnwindSafe for ExtractSegment

impl Send for ExtractSegment

impl Sync for ExtractSegment

impl Unpin for ExtractSegment

impl UnwindSafe for ExtractSegment

Blanket Implementations§

impl<T> Any for T
where T: 'static + ?Sized,

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T
where T: ?Sized,

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Returns the argument unchanged.

impl<T, U> Into<U> for T
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Calls U::from(self).

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Converts self into a Left variant of Either<Self, Self> if into_left is true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

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where F: FnOnce(&Self) -> bool,

Converts self into a Left variant of Either<Self, Self> if into_left(&self) returns true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

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type Init = T

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unsafe fn drop(ptr: usize)

Drops the object pointed to by the given pointer. Read more

impl<T> Same for T

type Output = T

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where SS: SubsetOf<SP>,

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The inverse inclusion map: attempts to construct self from the equivalent element of its superset. Read more

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Checks if self is actually part of its subset T (and can be converted to it).

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