List of all items

Structs

• bias::BiasInputs
• dumps::BiasDump
• fld::FragmentLengthDistribution
• gcbias::GcContext
• gcbias::GcFragModel
• gcbias::GcRank
• libdetect::LibraryTypeDetector
• posbias::SimplePosBias
• seqbias::SBModel
• spline::Spline

Enums

• gcbias::GcStore
• gcbias::GcView

Functions

• bias::build_expected_pos
• bias::corrected_effective_length_full
• bias::positional_factor
• dumps::gz_write
• dumps::write_aux_bias_dumps
• dumps::write_f64_gz
• dumps::write_fld_dump
• dumps::write_flen_dist
• dumps::write_i32_gz
• dumps::write_pos_gz
• fld::ambig_frag_log_prob
• fld::smoothed_effective_length
• gcbias::bin_frac
• gcbias::build_expected_gc
• gcbias::gc_corrected_effective_length
• gcbias::gc_desc
• gcbias::gc_frac
• gcbias::gc_prefix
• gcbias::gc_ratio
• posbias::compute_length_quantiles
• posbias::length_class_index
• seqbias::build_expected
• seqbias::corrected_effective_length
• seqbias::fld_cdf_and_bounds
• seqbias::log_bias

Constants

• gcbias::DEFAULT_COND_BINS
• gcbias::DEFAULT_GC_BINS
• gcbias::GC_MAX_RATIO
• gcbias::GC_SAMP_STRIDE
• libdetect::DEFAULT_SAMPLES_NEEDED
• posbias::NUM_LENGTH_CLASSES
• posbias::NUM_POS_BINS
• seqbias::CONTEXT_LEFT
• seqbias::CONTEXT_LENGTH
• seqbias::CONTEXT_RIGHT
• seqbias::FLD_SAMP_STRIDE