Enum rustyms::ComplexPeptide

pub enum ComplexPeptide {
    Singular(LinearPeptide),
    Multimeric(Vec<LinearPeptide>),
}

A single pro forma entry, can contain multiple peptides

Variants

Singular(LinearPeptide)

A single linear peptide

Multimeric(Vec<LinearPeptide>)

A multimeric spectrum, multiple peptides coexist in a single spectrum indicated with ‘+’ in pro forma

Implementations

impl ComplexPeptide

pub fn pro_forma(value: &str) -> Result<Self, CustomError>

Pro Forma specification Only supports a subset of the specification (see proforma_grammar.md for an overview of what is supported), some functions are not possible to be represented.

Errors

It fails when the string is not a valid Pro Forma string, with a minimal error message to help debug the cause.

pub fn sloppy_pro_forma( line: &str, location: Range<usize> ) -> Result<LinearPeptide, CustomError>

Read sloppy pro forma like sequences. Defined by the use of square or round braces to indicate modifications and missing any particular method of defining the N or C terminal modifications. Additionally any underscores will be ignored both on the ends and inside the sequence.

All modifications follow the same definitions as the strict pro forma syntax.

Errors

If it does not fit the above description.

pub fn assume_linear(self) -> LinearPeptide

Assume there is exactly one peptide in this collection

Panics

If there are no or multiple peptides.

pub fn peptides(&self) -> &[LinearPeptide]

Get all peptides making up this ComplexPeptide, regardless of its type

pub fn generate_theoretical_fragments( &self, max_charge: Charge, model: &Model ) -> Option<Vec<Fragment>>

Generate the theoretical fragments for this peptide collection.

Trait Implementations

impl Clone for ComplexPeptide

fn clone(&self) -> ComplexPeptide

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ComplexPeptide

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for ComplexPeptide

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for ComplexPeptide

fn eq(&self, other: &ComplexPeptide) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for ComplexPeptide