Enum rustyms::AminoAcid

pub enum AminoAcid {
    Alanine = 0,
    Arginine = 1,
    Asparagine = 2,
    AsparticAcid = 3,
    Cysteine = 4,
    Glutamine = 5,
    GlutamicAcid = 6,
    Glycine = 7,
    Histidine = 8,
    Isoleucine = 9,
    Leucine = 10,
    AmbiguousLeucine = 11,
    Lysine = 12,
    Methionine = 13,
    Phenylalanine = 14,
    Proline = 15,
    Serine = 16,
    Threonine = 17,
    Tryptophan = 18,
    Tyrosine = 19,
    Valine = 20,
    Selenocysteine = 21,
    Pyrrolysine = 22,
    Unknown = 23,
    AmbiguousAsparagine = 24,
    AmbiguousGlutamine = 25,
}

An amino acid, alongside the standard ones some ambiguous (J/X) and non-standard (U/O) are included. https://www.insdc.org/submitting-standards/feature-table/#7.4.3

Variants

Alanine = 0

Arginine = 1

Asparagine = 2

AsparticAcid = 3

Cysteine = 4

Glutamine = 5

GlutamicAcid = 6

Glycine = 7

Histidine = 8

Isoleucine = 9

Leucine = 10

AmbiguousLeucine = 11

Lysine = 12

Methionine = 13

Phenylalanine = 14

Proline = 15

Serine = 16

Threonine = 17

Tryptophan = 18

Tyrosine = 19

Valine = 20

Selenocysteine = 21

Pyrrolysine = 22

Unknown = 23

AmbiguousAsparagine = 24

AmbiguousGlutamine = 25

Implementations

impl AminoAcid

pub const A: Self = Self::Alanine

pub const B: Self = Self::AmbiguousAsparagine

pub const C: Self = Self::Cysteine

pub const D: Self = Self::AsparticAcid

pub const E: Self = Self::GlutamicAcid

pub const F: Self = Self::Phenylalanine

pub const G: Self = Self::Glycine

pub const H: Self = Self::Histidine

pub const I: Self = Self::Isoleucine

pub const J: Self = Self::AmbiguousLeucine

pub const K: Self = Self::Lysine

pub const L: Self = Self::Leucine

pub const M: Self = Self::Methionine

pub const N: Self = Self::Asparagine

pub const O: Self = Self::Pyrrolysine

pub const P: Self = Self::Proline

pub const Q: Self = Self::Glutamine

pub const R: Self = Self::Arginine

pub const S: Self = Self::Serine

pub const T: Self = Self::Threonine

pub const U: Self = Self::Selenocysteine

pub const V: Self = Self::Valine

pub const W: Self = Self::Tryptophan

pub const X: Self = Self::Unknown

pub const Y: Self = Self::Tyrosine

pub const Z: Self = Self::AmbiguousGlutamine

pub const Ala: Self = Self::Alanine

pub const Cys: Self = Self::Cysteine

pub const Asn: Self = Self::Asparagine

pub const Asp: Self = Self::AsparticAcid

pub const Asx: Self = Self::AmbiguousAsparagine

pub const Glu: Self = Self::GlutamicAcid

pub const Phe: Self = Self::Phenylalanine

pub const Gly: Self = Self::Glycine

pub const His: Self = Self::Histidine

pub const Ile: Self = Self::Isoleucine

pub const Xle: Self = Self::AmbiguousLeucine

pub const Lys: Self = Self::Lysine

pub const Leu: Self = Self::Leucine

pub const Met: Self = Self::Methionine

pub const Pyl: Self = Self::Pyrrolysine

pub const Pro: Self = Self::Proline

pub const Gln: Self = Self::Glutamine

pub const Glx: Self = Self::AmbiguousGlutamine

pub const Arg: Self = Self::Arginine

pub const Ser: Self = Self::Serine

pub const Thr: Self = Self::Threonine

pub const Sec: Self = Self::Selenocysteine

pub const Val: Self = Self::Valine

pub const Trp: Self = Self::Tryptophan

pub const Tyr: Self = Self::Tyrosine

pub const Xaa: Self = Self::Unknown

pub fn satellite_ion_fragments(&self) -> Vec<MolecularFormula>

pub fn fragments( &self, n_term: &[(MolecularFormula, String)], c_term: &[(MolecularFormula, String)], modifications: &MolecularFormula, charge_carriers: &MolecularCharge, sequence_index: usize, sequence_length: usize, ions: &PossibleIons<'_>, peptide_index: usize ) -> Vec<Fragment>

pub const fn char(&self) -> char

Trait Implementations

impl Chemical for AminoAcid

fn formula(&self) -> MolecularFormula

Get the molecular formula

impl Clone for AminoAcid

fn clone(&self) -> AminoAcid

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AminoAcid

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for AminoAcid

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Hash for AminoAcid

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl Ord for AminoAcid

fn cmp(&self, other: &AminoAcid) -> Ordering

This method returns an Ordering between self and other.

fn max(self, other: Self) -> Self

where Self: Sized,

Compares and returns the maximum of two values.

fn min(self, other: Self) -> Self

where Self: Sized,

Compares and returns the minimum of two values.

fn clamp(self, min: Self, max: Self) -> Self

where Self: Sized + PartialOrd,

Restrict a value to a certain interval.

impl PartialEq for AminoAcid

fn eq(&self, other: &AminoAcid) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd for AminoAcid

fn partial_cmp(&self, other: &AminoAcid) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn lt(&self, other: &Rhs) -> bool

This method tests less than (for self and other) and is used by the < operator.

fn le(&self, other: &Rhs) -> bool

This method tests less than or equal to (for self and other) and is used by the <= operator.

fn gt(&self, other: &Rhs) -> bool

This method tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

This method tests greater than or equal to (for self and other) and is used by the >= operator.

impl Serialize for AminoAcid

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl TryFrom<&str> for AminoAcid

type Error = ()

The type returned in the event of a conversion error.

fn try_from(value: &str) -> Result<Self, Self::Error>

Performs the conversion.

impl TryFrom<char> for AminoAcid

type Error = ()

The type returned in the event of a conversion error.

fn try_from(value: char) -> Result<Self, Self::Error>

Performs the conversion.

impl TryFrom<u8> for AminoAcid

type Error = ()

The type returned in the event of a conversion error.

fn try_from(value: u8) -> Result<Self, Self::Error>

Performs the conversion.

impl Copy for AminoAcid

impl Eq for AminoAcid

impl StructuralEq for AminoAcid

impl StructuralPartialEq for AminoAcid