Struct SamRecord 

pub struct SamRecord {
    pub qname: String,
    pub flag: u16,
    pub rname: String,
    pub pos: i32,
    pub mapq: u8,
    pub cigar: String,
    pub rnext: String,
    pub pnext: i32,
    pub tlen: i32,
    pub seq: Vec<Nuc>,
    pub qual: Vec<u8>,
    pub opt: Vec<SamOpt>,
}

A SAM record

Fields

qname: String

Query name

flag: u16

Bitwise flag

rname: String

Reference name

pos: i32

Position (1-based)

mapq: u8

Mapping quality

cigar: String

CIGAR string

rnext: String

Reference name of mate

pnext: i32

Position of mate

tlen: i32

Template length

seq: Vec<Nuc>

Sequence

qual: Vec<u8>

Quality scores

opt: Vec<SamOpt>

Optional fields

Implementations

impl SamRecord

pub fn new(qname: String) -> Self

Create a new SAM record

pub fn add_opt(&mut self, opt: SamOpt)

Add an optional field

Trait Implementations

impl Clone for SamRecord

fn clone(&self) -> SamRecord

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for SamRecord

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for SamRecord

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.