Enum Nuc 

#[repr(u8)]
pub enum Nuc {
    A = 0,
    C = 1,
    G = 2,
    T = 3,
    N = 4,
}

A nucleotide (A, C, G, T, or N)

Variants

A = 0

Adenine

C = 1

Cytosine

G = 2

Guanine

T = 3

Thymine

N = 4

Any nucleotide (wildcard)

Implementations

impl Nuc

pub const MAX_PACKED: u8 = 0x3F

Maximum valid value for packed nucleotides

pub fn from_ascii(b: u8) -> Option<Nuc>

Convert from ASCII byte

IUPAC ambiguous codes (R, Y, M, K, S, W, H, B, V, D) are converted to N. Lowercase versions are also accepted.

pub fn to_ascii(self) -> u8

Convert to ASCII byte

pub fn complement(self) -> Nuc

Get complement nucleotide

pub fn is_valid(self) -> bool

Check if nucleotide is valid (not N)

Trait Implementations

impl Clone for Nuc

fn clone(&self) -> Nuc

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Nuc

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Nuc

fn default() -> Nuc

Returns the “default value” for a type.

impl Display for Nuc

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Hash for Nuc

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq for Nuc

fn eq(&self, other: &Nuc) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for Nuc

impl Eq for Nuc

impl StructuralPartialEq for Nuc