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Aligner

rustalign_aligner

Struct Aligner 

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pub struct Aligner<I: FmIndex> { /* private fields */ }
Expand description

Main aligner that orchestrates seed search and DP extension

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impl<I: FmIndex> Aligner<I>

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pub fn new(index_fw: I, index_rc: I, params: AlignerParams) -> Self

Create a new aligner with the given FM-indexes

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pub fn align(&self, read: &[Nuc], read_rc: &[Nuc]) -> AlignmentResult

Align a single read

Searches both forward and reverse complement strands and returns the best alignment found.

Auto Trait Implementations§

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impl<I> Freeze for Aligner<I>
where I: Freeze,

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impl<I> RefUnwindSafe for Aligner<I>
where I: RefUnwindSafe,

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impl<I> Send for Aligner<I>
where I: Send,

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impl<I> Sync for Aligner<I>
where I: Sync,

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impl<I> Unpin for Aligner<I>
where I: Unpin,

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impl<I> UnsafeUnpin for Aligner<I>
where I: UnsafeUnpin,

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impl<I> UnwindSafe for Aligner<I>
where I: UnwindSafe,

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T, U> TryFrom<U> for T
where U: Into<T>,

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type Error = Infallible

The type returned in the event of a conversion error.
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fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.
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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.