Struct Seed 

pub struct Seed {
    pub bwt_row: u64,
    pub pos: usize,
    pub read_pos: usize,
    pub len: usize,
    pub seed_type: SeedType,
    pub constraint: Constraint,
    pub hit_count: usize,
}

A seed (substring match) for alignment

Fields

bwt_row: u64

BWT row position (for position resolution)

pos: usize

Starting position in reference

read_pos: usize

Starting position in read

len: usize

Length of the seed

seed_type: SeedType

Seed type

constraint: Constraint

Constraint used for this seed

hit_count: usize

Number of genome positions this seed sequence matches Lower values indicate more unique/better seeds

Implementations

impl Seed

pub fn new( bwt_row: u64, pos: usize, read_pos: usize, len: usize, seed_type: SeedType, ) -> Self

Create a new seed

pub fn with_hit_count( bwt_row: u64, pos: usize, read_pos: usize, len: usize, seed_type: SeedType, hit_count: usize, ) -> Self

Create a new seed with a specific hit count

Trait Implementations

impl Clone for Seed

fn clone(&self) -> Seed

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Seed

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.