Struct Penalties

pub struct Penalties {
    pub mismatch_pen: u32,
    pub open_pen: u32,
    pub extd_pen: u32,
}

Penalties used for WFA.

Fields

mismatch_pen: u32

There is a single mismatch penalty for every char combination. WFA requires that the match penalty is set to 0.

open_pen: u32

Gap opening penalty.

extd_pen: u32

Gap extension penalty. It is also applied when a gap is opened.

Trait Implementations

impl Clone for Penalties

fn clone(&self) -> Penalties

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Penalties

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for Penalties

fn eq(&self, other: &Penalties) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for Penalties

impl StructuralPartialEq for Penalties