Struct rust_sbml::ModelRaw

pub struct ModelRaw {

    pub id: Option<String>,
    pub metaid: Option<String>,
    pub name: Option<String>,
    pub substance_units: Option<UnitSIdRef>,
    pub time_units: Option<UnitSIdRef>,
    pub extent_units: Option<UnitSIdRef>,
    pub volume_units: Option<UnitSIdRef>,
    pub area_units: Option<UnitSIdRef>,
    pub length_units: Option<UnitSIdRef>,
    pub conversion_factor: Option<UnitSIdRef>,
    pub list_of_unit_definitions: ListOfUnitDefinitions,
    pub list_of_compartments: ListOfCompartments,
    pub list_of_species: ListOfSpecies,
    pub list_of_parameters: ListOfParameters,
    pub list_of_initial_assignments: ListOfInitialAssignments,
    pub list_of_reactions: ListOfReactions,
    pub list_of_constraints: ListOfConstraints,
    pub list_of_objectives: Option<ListOfObjectives>,
}

SBML model as defined in the SBML Level 3 Version 2 core.

Extended with fbc plugin

Example

use rust_sbml::ModelRaw;
use std::fs;

let ecoli = fs::read_to_string("examples/EcoliCore.xml").unwrap();
let raw_model = ModelRaw::parse(&ecoli).unwrap();
assert_eq!(
    raw_model.list_of_unit_definitions.unit_definitions[0].id.to_owned().unwrap(),
    "mmol_per_gDW_per_hr"
)

Fields

id: Option<String>

metaid: Option<String>

name: Option<String>

substance_units: Option<UnitSIdRef>

time_units: Option<UnitSIdRef>

extent_units: Option<UnitSIdRef>

volume_units: Option<UnitSIdRef>

area_units: Option<UnitSIdRef>

length_units: Option<UnitSIdRef>

conversion_factor: Option<UnitSIdRef>

list_of_unit_definitions: ListOfUnitDefinitions

list_of_compartments: ListOfCompartments

list_of_species: ListOfSpecies

list_of_parameters: ListOfParameters

list_of_initial_assignments: ListOfInitialAssignments

list_of_reactions: ListOfReactions

list_of_constraints: ListOfConstraints

list_of_objectives: Option<ListOfObjectives>

Implementations

impl ModelRaw

pub fn parse(doc: &str) -> Result<Self, DeError>

pub fn to_string(&self) -> Result<String, DeError>

Trait Implementations

impl Clone for ModelRaw

fn clone(&self) -> ModelRaw

Returns a copy of the value.

pub fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ModelRaw

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for ModelRaw

fn default() -> ModelRaw

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for ModelRaw

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error> where
    __D: Deserializer<'de>, 

Deserialize this value from the given Serde deserializer.

impl From<&'_ ModelRaw> for ModelUnits

fn from(raw_model: &ModelRaw) -> Self

Performs the conversion.

impl PartialEq<ModelRaw> for ModelRaw

fn eq(&self, other: &ModelRaw) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &ModelRaw) -> bool

This method tests for !=.

impl Serialize for ModelRaw

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error> where
    __S: Serializer, 

Serialize this value into the given Serde serializer.

impl StructuralPartialEq for ModelRaw