pub struct Reader { /* private fields */ }
Expand description
A Tabix file reader.
This struct and its associated functions are meant for reading plain-text tabix indexed
by tabix
.
Note that the tabix
command from htslib
can actually several more things, including
building indices and converting BCF to VCF text output. Both is out of scope here.
Implementations§
Source§impl Reader
impl Reader
pub fn from_url(url: &Url) -> Result<Self>
Sourcepub fn fetch(&mut self, tid: u64, start: u64, end: u64) -> Result<()>
pub fn fetch(&mut self, tid: u64, start: u64, end: u64) -> Result<()>
Fetch region given by numeric sequence number and 0-based begin and end position.
Sourcepub fn set_threads(&mut self, n_threads: usize) -> Result<()>
pub fn set_threads(&mut self, n_threads: usize) -> Result<()>
Activate multi-threaded BGZF read support in htslib. This should permit faster reading of large BGZF files.
§Arguments
n_threads
- number of extra background reader threads to use
pub fn hts_format(&self) -> htsExactFormat
Trait Implementations§
Source§impl Read for Reader
impl Read for Reader
impl Send for Reader
Auto Trait Implementations§
impl Freeze for Reader
impl RefUnwindSafe for Reader
impl !Sync for Reader
impl Unpin for Reader
impl UnwindSafe for Reader
Blanket Implementations§
Source§impl<T> BorrowMut<T> for Twhere
T: ?Sized,
impl<T> BorrowMut<T> for Twhere
T: ?Sized,
Source§fn borrow_mut(&mut self) -> &mut T
fn borrow_mut(&mut self) -> &mut T
Mutably borrows from an owned value. Read more