Enum rust_htslib::errors::Error

pub enum Error {
    FileNotFound {
        path: PathBuf,
    },
    NonUnicodePath,
    Fetch,
    FileSeek,
    GenomicSeek {
        contig: String,
        start: u64,
    },
    UnknownSequence {
        sequence: String,
    },
    SetThreads,
    ThreadPool,
    WriteRecord,
    FaidxPositionTooLarge,
    FaidxBadSeqName,
    FaidxBuildFailed {
        path: PathBuf,
    },
    TabixNoIter,
    TabixTruncatedRecord,
    TabixInvalidIndex,
    BamParseCigar {
        msg: String,
    },
    BamUnexpectedCigarOperation {
        msg: String,
    },
    BamParseSAM {
        rec: String,
    },
    BamInvalidReferencePath {
        path: PathBuf,
    },
    BamInvalidCompressionLevel {
        level: u32,
    },
    BamOpen {
        target: String,
    },
    BamInvalidIndex {
        target: String,
    },
    BamInvalidRecord,
    BamTruncatedRecord,
    BamNotIndexable,
    BamWriteIndex,
    BamBuildIndex,
    BamPileup,
    BamUnsorted,
    BamAux,
    BamAuxStringError,
    BamAuxParsingError,
    BamAuxTagNotFound,
    BamAuxUnknownType,
    BamAuxTagAlreadyPresent,
    BamBaseModificationTagNotFound,
    BamBaseModificationTypeNotFound,
    BamBaseModificationIterationFailed,
    BamBaseModificationTooManyMods,
    BcfAllocationError,
    BcfOpen {
        target: String,
    },
    BcfInvalidRecord,
    BcfUndefinedTag {
        tag: String,
    },
    BcfUnexpectedType {
        tag: String,
    },
    BcfMissingTag {
        tag: String,
        record: String,
    },
    BcfSetTag {
        tag: String,
    },
    BcfUnknownRID {
        rid: u32,
    },
    BcfUnknownContig {
        contig: String,
    },
    BcfUnknownID {
        id: String,
    },
    BcfUnknownSample {
        name: String,
    },
    BcfDuplicateSampleNames,
    BcfSetValues,
    BcfRemoveAlleles,
    BgzfInvalidCompressionLevel {
        level: i8,
    },
    HtsSetOpt,
    SlowIdxStats,
    InvalidTid {
        tid: i32,
    },
    NoSequencesInReference,
}

Variants

FileNotFound

Fields

path: PathBuf

NonUnicodePath

Fetch

FileSeek

GenomicSeek

Fields

contig: String

start: u64

UnknownSequence

Fields

sequence: String

SetThreads

ThreadPool

WriteRecord

FaidxPositionTooLarge

FaidxBadSeqName

FaidxBuildFailed

Fields

path: PathBuf

TabixNoIter

TabixTruncatedRecord

TabixInvalidIndex

BamParseCigar

Fields

msg: String

BamUnexpectedCigarOperation

Fields

msg: String

BamParseSAM

Fields

rec: String

BamInvalidReferencePath

Fields

path: PathBuf

BamInvalidCompressionLevel

Fields

level: u32

BamOpen

Fields

target: String

BamInvalidIndex

Fields

target: String

BamInvalidRecord

BamTruncatedRecord

BamNotIndexable

BamWriteIndex

BamBuildIndex

BamPileup

BamUnsorted

BamAux

BamAuxStringError

BamAuxParsingError

BamAuxTagNotFound

BamAuxUnknownType

BamAuxTagAlreadyPresent

BamBaseModificationTagNotFound

BamBaseModificationTypeNotFound

BamBaseModificationIterationFailed

BamBaseModificationTooManyMods

BcfAllocationError

BcfOpen

Fields

target: String

BcfInvalidRecord

BcfUndefinedTag

Fields

tag: String

BcfUnexpectedType

Fields

tag: String

BcfMissingTag

Fields

tag: String

record: String

BcfSetTag

Fields

tag: String

BcfUnknownRID

Fields

rid: u32

BcfUnknownContig

Fields

contig: String

BcfUnknownID

Fields

id: String

BcfUnknownSample

Fields

name: String

BcfDuplicateSampleNames

BcfSetValues

BcfRemoveAlleles

BgzfInvalidCompressionLevel

Fields

level: i8

HtsSetOpt

SlowIdxStats

InvalidTid

Fields

tid: i32

NoSequencesInReference

Trait Implementations

impl Debug for Error

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for Error

fn fmt(&self, __formatter: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Error for Error

fn source(&self) -> Option<&(dyn Error + 'static)>

The lower-level source of this error, if any.

fn description(&self) -> &str

👎Deprecated since 1.42.0: use the Display impl or to_string()

fn cause(&self) -> Option<&dyn Error>

👎Deprecated since 1.33.0: replaced by Error::source, which can support downcasting

fn provide<'a>(&'a self, request: &mut Request<'a>)

🔬This is a nightly-only experimental API. (error_generic_member_access)

Provides type based access to context intended for error reports.

impl PartialEq for Error

fn eq(&self, other: &Error) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for Error