Enum rust_htslib::errors::Error

source · [−]

pub enum Error {
Show 46 variants    FileNotFound {
        path: PathBuf,
    },
    NonUnicodePath,
    Fetch,
    FileSeek,
    GenomicSeek {
        contig: String,
        start: u64,
    },
    UnknownSequence {
        sequence: String,
    },
    SetThreads,
    ThreadPool,
    WriteRecord,
    FaidxPositionTooLarge,
    TabixNoIter,
    TabixTruncatedRecord,
    TabixInvalidIndex,
    BamParseCigar {
        msg: String,
    },
    BamUnexpectedCigarOperation {
        msg: String,
    },
    BamParseSAM {
        rec: String,
    },
    BamInvalidReferencePath {
        path: PathBuf,
    },
    BamInvalidCompressionLevel {
        level: u32,
    },
    BamOpen {
        target: String,
    },
    BamInvalidIndex {
        target: String,
    },
    BamInvalidRecord,
    BamTruncatedRecord,
    BamNotIndexable,
    BamWriteIndex,
    BamBuildIndex,
    BamPileup,
    BamAux,
    BamAuxStringError,
    BamAuxParsingError,
    BamAuxTagNotFound,
    BamAuxUnknownType,
    BamAuxTagAlreadyPresent,
    BcfAllocationError,
    BcfOpen {
        target: String,
    },
    BcfInvalidRecord,
    BcfUndefinedTag {
        tag: String,
    },
    BcfUnexpectedType {
        tag: String,
    },
    BcfMissingTag {
        tag: String,
        record: String,
    },
    BcfSetTag {
        tag: String,
    },
    BcfUnknownRID {
        rid: u32,
    },
    BcfUnknownContig {
        contig: String,
    },
    BcfUnknownID {
        id: String,
    },
    BcfUnknownSample {
        name: String,
    },
    BcfDuplicateSampleNames,
    BcfSetValues,
    BcfRemoveAlleles,
}

Variants

`FileNotFound`

Fields

path: PathBuf

`NonUnicodePath`

`Fetch`

`FileSeek`

`GenomicSeek`

Fields

contig: String

start: u64

`UnknownSequence`

Fields

sequence: String

`SetThreads`

`ThreadPool`

`WriteRecord`

`FaidxPositionTooLarge`

`TabixNoIter`

`TabixTruncatedRecord`

`TabixInvalidIndex`

`BamParseCigar`

Fields

msg: String

`BamUnexpectedCigarOperation`

Fields

msg: String

`BamParseSAM`

Fields

rec: String

`BamInvalidReferencePath`

Fields

path: PathBuf

`BamInvalidCompressionLevel`

Fields

level: u32

`BamOpen`

Fields

target: String

`BamInvalidIndex`

Fields

target: String

`BamInvalidRecord`

`BamTruncatedRecord`

`BamNotIndexable`

`BamWriteIndex`

`BamBuildIndex`

`BamPileup`

`BamAux`

`BamAuxStringError`

`BamAuxParsingError`

`BamAuxTagNotFound`

`BamAuxUnknownType`

`BamAuxTagAlreadyPresent`

`BcfAllocationError`

`BcfOpen`

Fields

target: String

`BcfInvalidRecord`

`BcfUndefinedTag`

Fields

tag: String

`BcfUnexpectedType`

Fields

tag: String

`BcfMissingTag`

Fields

tag: String

record: String

`BcfSetTag`

Fields

tag: String

`BcfUnknownRID`

Fields

rid: u32

`BcfUnknownContig`

Fields

contig: String

`BcfUnknownID`

Fields

id: String

`BcfUnknownSample`

Fields

name: String

`BcfDuplicateSampleNames`

`BcfSetValues`

`BcfRemoveAlleles`

Trait Implementations

impl Debug for Error

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl Display for Error

fn fmt(&self, __formatter: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl Error for Error

1.30.0 · source

fn source(&self) -> Option<&(dyn Error + 'static)>

The lower-level source of this error, if any. Read more

fn backtrace(&self) -> Option<&Backtrace>

🔬 This is a nightly-only experimental API. (backtrace)

Returns a stack backtrace, if available, of where this error occurred. Read more

1.0.0 · source

fn description(&self) -> &str

👎 Deprecated since 1.42.0:

use the Display impl or to_string()

1.0.0 · source

fn cause(&self) -> Option<&dyn Error>

👎 Deprecated since 1.33.0:

replaced by Error::source, which can support downcasting

impl PartialEq<Error> for Error

fn eq(&self, other: &Error) -> bool

This method tests for self and other values to be equal, and is used by ==. Read more

fn ne(&self, other: &Error) -> bool

This method tests for !=.

impl StructuralPartialEq for Error

Auto Trait Implementations

impl RefUnwindSafe for Error

impl Send for Error

impl Sync for Error

impl Unpin for Error

impl UnwindSafe for Error

Blanket Implementations

impl<T> Any for T where
T: 'static + ?Sized,

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T where
T: ?Sized,

const: unstable · source

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T where
T: ?Sized,

const: unstable · source

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

impl<T> From<T> for T

const: unstable · source

fn from(t: T) -> T

Returns the argument unchanged.

impl<T, U> Into<U> for T where
U: From<T>,

const: unstable · source

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> ToString for T where
T: Display + ?Sized,

default fn to_string(&self) -> String

Converts the given value to a String. Read more

impl<T, U> TryFrom<U> for T where
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

const: unstable · source

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

const: unstable · source

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.