Struct rust_htslib::bam::record::Seq

pub struct Seq<'a> {
    pub encoded: &'a [u8],
    /* private fields */
}

The sequence of a record.

Fields

encoded: &'a [u8]

Implementations

impl<'a> Seq<'a>

pub fn encoded_base(&self, i: usize) -> u8

Return encoded base. Complexity: O(1).

pub unsafe fn encoded_base_unchecked(&self, i: usize) -> u8

Return encoded base. Complexity: O(1).

pub unsafe fn decoded_base_unchecked(&self, i: usize) -> u8

Obtain decoded base without performing bounds checking. Use index based access seq()[i], for checked, safe access. Complexity: O(1).

pub fn as_bytes(&self) -> Vec<u8>

Return decoded sequence. Complexity: O(m) with m being the read length.

pub fn len(&self) -> usize

Return length (in bases) of the sequence.

pub fn is_empty(&self) -> bool

Trait Implementations

impl<'a> Clone for Seq<'a>

fn clone(&self) -> Seq<'a>

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl<'a> Debug for Seq<'a>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'a> Index<usize> for Seq<'a>

fn index(&self, index: usize) -> &u8

Return decoded base at given position within read. Complexity: O(1).

type Output = u8

The returned type after indexing.

impl<'a> Copy for Seq<'a>

impl<'a> Send for Seq<'a>

impl<'a> Sync for Seq<'a>