Enum rust_htslib::errors::Error

pub enum Error {
    FileNotFound {
        path: PathBuf,
    },
    NonUnicodePath,
    Fetch,
    FileSeek,
    GenomicSeek {
        contig: String,
        start: u64,
    },
    UnknownSequence {
        sequence: String,
    },
    SetThreads,
    ThreadPool,
    WriteRecord,
    FaidxPositionTooLarge,
    TabixNoIter,
    TabixTruncatedRecord,
    TabixInvalidIndex,
    BamParseCigar {
        msg: String,
    },
    BamUnexpectedCigarOperation {
        msg: String,
    },
    BamParseSAM {
        rec: String,
    },
    BamInvalidReferencePath {
        path: PathBuf,
    },
    BamInvalidCompressionLevel {
        level: u32,
    },
    BamOpen {
        target: String,
    },
    BamInvalidIndex {
        target: String,
    },
    BamInvalidRecord,
    BamTruncatedRecord,
    BamNotIndexable,
    BamWriteIndex,
    BamBuildIndex,
    BamPileup,
    BamAux,
    BamAuxStringError,
    BamAuxParsingError,
    BamAuxTagNotFound,
    BamAuxUnknownType,
    BamAuxTagAlreadyPresent,
    BcfAllocationError,
    BcfOpen {
        target: String,
    },
    BcfInvalidRecord,
    BcfUndefinedTag {
        tag: String,
    },
    BcfUnexpectedType {
        tag: String,
    },
    BcfMissingTag {
        tag: String,
        record: String,
    },
    BcfSetTag {
        tag: String,
    },
    BcfUnknownRID {
        rid: u32,
    },
    BcfUnknownContig {
        contig: String,
    },
    BcfUnknownID {
        id: String,
    },
    BcfUnknownSample {
        name: String,
    },
    BcfDuplicateSampleNames,
    BcfSetValues,
    BcfRemoveAlleles,
}

Variants

FileNotFound

Fields of FileNotFound

path: PathBuf

NonUnicodePath

Fetch

FileSeek

GenomicSeek

Fields of GenomicSeek

contig: Stringstart: u64

UnknownSequence

Fields of UnknownSequence

sequence: String

SetThreads

ThreadPool

WriteRecord

FaidxPositionTooLarge

TabixNoIter

TabixTruncatedRecord

TabixInvalidIndex

BamParseCigar

Fields of BamParseCigar

msg: String

BamUnexpectedCigarOperation

Fields of BamUnexpectedCigarOperation

msg: String

BamParseSAM

Fields of BamParseSAM

rec: String

BamInvalidReferencePath

Fields of BamInvalidReferencePath

path: PathBuf

BamInvalidCompressionLevel

Fields of BamInvalidCompressionLevel

level: u32

BamOpen

Fields of BamOpen

target: String

BamInvalidIndex

Fields of BamInvalidIndex

target: String

BamInvalidRecord

BamTruncatedRecord

BamNotIndexable

BamWriteIndex

BamBuildIndex

BamPileup

BamAux

BamAuxStringError

BamAuxParsingError

BamAuxTagNotFound

BamAuxUnknownType

BamAuxTagAlreadyPresent

BcfAllocationError

BcfOpen

Fields of BcfOpen

target: String

BcfInvalidRecord

BcfUndefinedTag

Fields of BcfUndefinedTag

tag: String

BcfUnexpectedType

Fields of BcfUnexpectedType

tag: String

BcfMissingTag

Fields of BcfMissingTag

tag: Stringrecord: String

BcfSetTag

Fields of BcfSetTag

tag: String

BcfUnknownRID

Fields of BcfUnknownRID

rid: u32

BcfUnknownContig

Fields of BcfUnknownContig

contig: String

BcfUnknownID

Fields of BcfUnknownID

id: String

BcfUnknownSample

Fields of BcfUnknownSample

name: String

BcfDuplicateSampleNames

BcfSetValues

BcfRemoveAlleles

Trait Implementations

impl Debug for Error

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for Error

fn fmt(&self, __formatter: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Error for Error

fn source(&self) -> Option<&(dyn Error + 'static)>

The lower-level source of this error, if any.

fn backtrace(&self) -> Option<&Backtrace>

🔬 This is a nightly-only experimental API. (backtrace)

Returns a stack backtrace, if available, of where this error occurred.

fn description(&self) -> &str

👎 Deprecated since 1.42.0:

use the Display impl or to_string()

fn cause(&self) -> Option<&dyn Error>

👎 Deprecated since 1.33.0:

replaced by Error::source, which can support downcasting

impl PartialEq<Error> for Error

fn eq(&self, other: &Error) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Error) -> bool

This method tests for !=.

impl StructuralPartialEq for Error