Enum rust_htslib::bam::FetchDefinition [−][src]
pub enum FetchDefinition<'a> {
Region(i32, i64, i64),
RegionString(&'a [u8], i64, i64),
CompleteTid(i32),
String(&'a [u8]),
All,
Unmapped,
}Expand description
Enum for IndexdReader.fetch() arguments.
tids may be converted From<>:
- i32 (correct as per spec)
- u32 (because of header.tid. Will panic if above 2^31-1).
Coordinates may be (via FetchCoordinate)
- i32 (as of the sam v1 spec)
- i64 (as of the htslib ‘large coordinate’ extension (even though they are not supported in BAM)
- u32 (because that’s what rust literals will default to)
- u64 (because of header.target_len(). Will panic if above 2^^63-1).
Variants
tid, start, stop,
‘named-reference’, start, stop tuple.
CompleteTid(i32)complete reference. May be i32 or u32 (which panics if above 2^31-’)
complete reference by name (&u8 or &str)
Every read
Only reads with the BAM flag BAM_FUNMAP (which might not be all reads with reference = -1)
Trait Implementations
Performs the conversion.
Performs the conversion.
Performs the conversion.
Performs the conversion.
Auto Trait Implementations
impl<'a> RefUnwindSafe for FetchDefinition<'a>impl<'a> Send for FetchDefinition<'a>impl<'a> Sync for FetchDefinition<'a>impl<'a> Unpin for FetchDefinition<'a>impl<'a> UnwindSafe for FetchDefinition<'a>