[−][src]Trait rust_htslib::bcf::Read

pub trait Read: Sized {
    fn read(&mut self, record: &mut Record) -> Result<(), ReadError>;

    fn records(&mut self) -> Records<Self>;

    fn header(&self) -> &HeaderView;

    fn empty_record(&self) -> Record;

    fn set_threads(&mut self, n_threads: usize) -> Result<(), ThreadingError>;
}

A trait for a BCF reader with a read method.

Required methods

fn read(&mut self, record: &mut Record) -> Result<(), ReadError>

Read the next record.

Arguments

  • record - an empty record, that can be created with bcf::Reader::empty_record.

ⓘImportant traits for Records<'a, R>
fn records(&mut self) -> Records<Self>

Return an iterator over all records of the VCF/BCF file.

fn header(&self) -> &HeaderView

Return the header.

fn empty_record(&self) -> Record

Return empty record. Can be reused multiple times.

fn set_threads(&mut self, n_threads: usize) -> Result<(), ThreadingError>

Activate multi-threaded BCF/VCF read support in htslib. This should permit faster reading of large VCF files.

Setting nthreads to 0 does not change the current state. Note that it is not possible to set the number of background threads below 1 once it has been set.

Arguments

  • n_threads - number of extra background writer threads to use, must be > 0.
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Implementors

impl Read for IndexedReader[src]

impl Read for Reader[src]

fn empty_record(&self) -> Record[src]

Return empty record. Can be reused multiple times.

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