Struct BinnedCoverage 

pub struct BinnedCoverage {
    pub chroms: Vec<ChromBins>,
    pub total_binned: u64,
    pub total_mapped: u64,
}

The result of binning one BAM: per-chromosome bin counts plus two read totals that downstream normalisation needs.

Fields

chroms: Vec<ChromBins>

Per-chromosome bin counts, in header reference order.

total_binned: u64

Reads that contributed at least one bin increment — the denominator deeptools bamCoverage uses for CPM/RPKM/RPGC (reads actually placed on the genome after the filter and the ref_len > 0 / in-bounds checks).

total_mapped: u64

All mapped reads passing the filter, regardless of whether they landed in a bin — the count deeptools bamCompare uses for its readCount scale factor (min(m1, m2) / mi). With no filter this equals the BAM’s mapped read count (bam.mapped).

Implementations

impl BinnedCoverage

pub fn total_signal(&self) -> u64

Total signal across every bin — the BPM denominator (sum of all bin counts).

Trait Implementations

impl Clone for BinnedCoverage

fn clone(&self) -> BinnedCoverage

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for BinnedCoverage

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.