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FeatureAnalyzer

Struct FeatureAnalyzer 

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pub struct FeatureAnalyzer { /* private fields */ }
Expand description

The shipped features egress, expressed as a ColumnAnalyzer — proof the trait carries the real production analyzer. Counts the rows it emits (folded into the receipt via ColumnAnalyzer::params).

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impl FeatureAnalyzer

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pub fn rows(&self) -> u64

Number of feature rows written so far.

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impl ColumnAnalyzer for FeatureAnalyzer

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fn header(&self) -> Option<String>

Optional header written once, before any column (e.g. a TSV header line, including its trailing newline). Default: none.
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fn params(&self) -> BTreeMap<String, String>

Parameters to fold into the run receipt (provenance). Default: none.
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fn on_column( &mut self, col: &PileupColumn, contig: &str, out: &mut dyn Write, ) -> Result<()>

Process one callable pileup column, writing any output to out. Called in (contig, position) order; contig is the column’s contig name. Keep per-call state O(1) (or bounded) to preserve the memory contract.
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impl Debug for FeatureAnalyzer

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl Default for FeatureAnalyzer

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fn default() -> FeatureAnalyzer

Returns the “default value” for a type. Read more

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T, U> TryFrom<U> for T
where U: Into<T>,

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type Error = Infallible

The type returned in the event of a conversion error.
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fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.
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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.