Crate refget_store 

Storage traits and implementations for refget sequences and sequence collections.

Re-exports

pub use fasta::DigestCache;

pub use fasta::FastaSequenceStore;

pub use fasta::FastaSequenceSummary;

pub use fasta::SeqColCache;

pub use fasta::SidecarCache;

Modules

fasta

FASTA-backed sequence store that loads sequences into memory.

Structs

InMemorySeqColStore

An in-memory store of sequence collections, indexed by Level 0 digest and by per-attribute digests.

InMemorySequenceStore

An in-memory sequence store suitable for testing and small datasets.

ListItem

A single item in a collection listing.

ListResult

Result from listing collections.

MmapSequenceStore

A sequence store backed by memory-mapped FASTA files.

Enums

StoreError

Errors from store operations.

Traits

SeqColStore

Trait for storing and retrieving sequence collections.

SequenceStore

Trait for retrieving sequences and their metadata.

Functions

collect_fasta_files

Collect FASTA files from a list of paths (files or directories).

is_fasta_file

Check if a path has a FASTA file extension.

Type Aliases

StoreResult

Result type for store operations.