Struct RefgetConfig 

pub struct RefgetConfig {
    pub circular_supported: bool,
    pub algorithms: Vec<String>,
    pub subsequence_limit: u64,
    pub circular_sequences: Vec<String>,
    pub service_info: ServiceInfoConfig,
}

Configuration for the refget server.

Loaded from a YAML config file via --config or constructed with defaults.

Example YAML

# Required refget protocol settings
circular_supported: true
algorithms:
  - md5
  - ga4gh
subsequence_limit: 0  # 0 = no limit

# Sequences to treat as circular (by FASTA name)
circular_sequences:
  - NC_001422.1
  - chrM

# Optional GA4GH service-info fields
service_info:
  organization:
    name: "My Organization"
    url: "https://example.org"
  contact_url: "mailto:admin@example.org"
  documentation_url: "https://example.org/docs"
  environment: "production"

Fields

circular_supported: bool

Whether circular sequence retrieval is supported.

algorithms: Vec<String>

Supported hash algorithms.

subsequence_limit: u64

Maximum length of a subsequence request (0 = no limit).

circular_sequences: Vec<String>

Sequence names that should be treated as circular.

service_info: ServiceInfoConfig

Optional GA4GH service-info fields.

Trait Implementations

impl Clone for RefgetConfig

fn clone(&self) -> RefgetConfig

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for RefgetConfig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for RefgetConfig

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for RefgetConfig

where RefgetConfig: Default,

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for RefgetConfig

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.