Struct ScoringWeights 

pub struct ScoringWeights {
    pub contig_match: f64,
    pub coverage: f64,
    pub order: f64,
    pub conflict_penalty: f64,
}

Configurable weights for the scoring algorithm

The scoring algorithm uses three main components:

• contig_match: Per-contig match quality (exact, name+length, conflicts)
• coverage: What fraction of the reference is covered by good matches
• order: Whether contigs appear in the same order

Additionally, conflict_penalty controls how much credit MD5 conflicts receive (name+length matches but MD5 differs, indicating different sequences).

Fields

contig_match: f64

Weight for per-contig match score (default 0.70 = 70%)

coverage: f64

Weight for reference coverage (default 0.20 = 20%)

order: f64

Weight for contig ordering (default 0.10 = 10%)

conflict_penalty: f64

Credit given to MD5 conflicts (default 0.1 = 10% credit) Set to 0.0 for zero credit on conflicts, 1.0 to treat conflicts as matches

Implementations

impl ScoringWeights

pub fn normalized(&self) -> Self

Normalize the main weights (contig_match, coverage, order) to sum to 1.0 The conflict_penalty is kept as-is since it’s a multiplier, not a weight.

Trait Implementations

impl Clone for ScoringWeights

fn clone(&self) -> ScoringWeights

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ScoringWeights

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for ScoringWeights

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for ScoringWeights

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for ScoringWeights

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.