Struct MeanReadLengths

pub struct MeanReadLengths {
    pub on_target: isize,
    pub off_target: isize,
    pub total: isize,
    /* private fields */
}

Represents the mean read lengths for on-target, off-target, and total reads.

Fields

on_target: isize

The mean read length of on-target reads.

off_target: isize

The mean read length of off-target reads.

total: isize

The mean read length of all reads (on-target + off-target).

Implementations

impl MeanReadLengths

pub fn new() -> Self

Creates a new MeanReadLengths instance with all fields initialized to 0.

pub fn update_lengths(&mut self, paf: &PafRecord, on_target: bool)

Updates the mean read lengths for on-target, off-target, and total reads based on the provided PAF record and whether the read is on-target or off-target.

Arguments

• paf - A reference to the PafRecord representing the alignment record for a read.
• on_target - A boolean indicating whether the read is on-target (true) or off-target (false).

Example

use readfish_tools::{MeanReadLengths, paf::PafRecord};
let mut mean_lengths = MeanReadLengths::new();
let paf_record = PafRecord::new("read123 200 0 200 + contig123 300 0 300 200 200 50 ch=1".split(" ").collect()).unwrap();
mean_lengths.update_lengths(&paf_record, true);

Trait Implementations

impl Debug for MeanReadLengths

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for MeanReadLengths

fn default() -> Self

Returns the “default value” for a type.