Struct _Condition 

pub struct _Condition {
    pub name: String,
    pub control: bool,
    pub min_chunks: u8,
    pub max_chunks: u8,
    pub targets: Targets,
    pub single_off: Action,
    pub single_on: Action,
    pub multi_off: Action,
    pub multi_on: Action,
    pub no_map: Action,
    pub no_seq: Action,
}

The _Condition struct holds the settings lifted from the TOML file, for each region of the flowcell or barcode.

Fields

name: String

The name of the Condition (Barcode/Region).

control: bool

Is this Region/Barcode a control region / Barcode

min_chunks: u8

The minimum number of read chunks that have to be captured for a read to be processed. Default if not met is to proceed.

max_chunks: u8

The maximum number of read chunks that can be captured for a read. Default if exceed is to unblock.

targets: Targets

The targets associated with the Condition.

single_off: Action

The action to perform when an alignment returns one single primary mapping, outside of any target regions.

single_on: Action

The action to perform when an alignment returns one single primary mapping, inside of a target regions.

multi_off: Action

The action to perform when an alignment returns multiple primary mappings, all outside of any target regions.

multi_on: Action

The action to perform when an alignment returns multiple primary mappings, at LEAST ONE of which is inside of a target region.

no_map: Action

The action to perform when no alignments are returned for this read.

no_seq: Action

The action to perform when no sequence is produced for this read sequence.

Implementations

impl _Condition

pub fn get_name(&self) -> &String

Getter for the name field

pub fn set_name(&mut self, name: String)

Setter for the name field

pub fn is_control(&self) -> bool

Getter for the control field

pub fn set_control(&mut self, control: bool)

Setter for the control field

pub fn get_min_chunks(&self) -> u8

Getter for the min_chunks field

pub fn set_min_chunks(&mut self, min_chunks: u8)

Setter for the min_chunks field

pub fn get_max_chunks(&self) -> u8

Getter for the max_chunks field

pub fn set_max_chunks(&mut self, max_chunks: u8)

Setter for the max_chunks field

pub fn get_targets(&self) -> &Targets

Getter for the targets field

pub fn set_targets(&mut self, targets: Targets)

Setter for the targets field

pub fn get_single_off(&self) -> &Action

Getter and Setter for the single_off field

pub fn set_single_off(&mut self, single_off: Action)

Set the Action to take when a single primary mapping is found outside of any target regions.

pub fn get_single_on(&self) -> &Action

Getter and Setter for the single_on field

pub fn set_single_on(&mut self, single_on: Action)

Set the Action to take when a single primary mapping is found on of any target regions.

pub fn get_multi_off(&self) -> &Action

Getter and Setter for the multi_off field

pub fn set_multi_off(&mut self, multi_off: Action)

Getter and Setter for the multi_off field

pub fn get_multi_on(&self) -> &Action

Getter and Setter for the multi_on field

pub fn set_multi_on(&mut self, multi_on: Action)

Getter and Setter for the multi_off field

pub fn get_no_map(&self) -> &Action

Getter and Setter for the no_map field

pub fn set_no_map(&mut self, no_map: Action)

Getter and Setter for the multi_off field

pub fn get_no_seq(&self) -> &Action

Getter and Setter for the no_seq field

pub fn set_no_seq(&mut self, no_seq: Action)

Getter and Setter for the multi_off field

Trait Implementations

impl Debug for _Condition

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl From<&Map<String, Value>> for _Condition

fn from(source: &Map<String, Value>) -> Self

Converts to this type from the input type.

impl PartialEq for _Condition

fn eq(&self, other: &_Condition) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for _Condition