Opls

Struct Opls 

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pub struct Opls<T> { /* private fields */ }
Expand description

OPLS Fourier series torsion potential.

§Parameters

  • c1, c2, c3, c4: Fourier coefficients (energy units)

§Precomputed Values

  • offset: Stores c1 + c2 + c3 + c4 for efficient computation

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impl<T: Vector> Opls<T>

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pub fn new(c1: f64, c2: f64, c3: f64, c4: f64) -> Self

Creates a new OPLS torsion potential.

§Arguments
  • c1, c2, c3, c4: Fourier coefficients
§Example
use potentials::torsion::Opls;

// Typical alkane torsion
let torsion = Opls::<f64>::new(0.7, 0.1, 1.5, 0.0);
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pub fn simple(c1: f64, c3: f64) -> Self

Creates with only n=1 and n=3 terms (common case).

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pub fn threefold(c3: f64) -> Self

Creates with only n=3 term (pure three-fold).

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impl<T: Clone> Clone for Opls<T>

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fn clone(&self) -> Opls<T>

Returns a duplicate of the value. Read more
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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl<T: Debug> Debug for Opls<T>

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl<T: PartialEq> PartialEq for Opls<T>

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fn eq(&self, other: &Opls<T>) -> bool

Tests for self and other values to be equal, and is used by ==.
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fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.
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impl<T: Vector> Potential4<T> for Opls<T>

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fn energy(&self, cos_phi: T, _sin_phi: T) -> T

Computes the potential energy.

V = offset + c1*cos(phi) - c2*cos(2phi) + c3*cos(3phi) - c4*cos(4phi)

Uses Chebyshev polynomials for cos(n*phi):

  • cos(2phi) = 2*cos^2(phi) - 1
  • cos(3phi) = 4cos^3(phi) - 3cos(phi)
  • cos(4phi) = 8cos^4(phi) - 8cos^2(phi) + 1
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fn derivative(&self, cos_phi: T, sin_phi: T) -> T

Computes dV/d(phi).

dV/dphi = -c1*sin(phi) + 2*c2*sin(2phi) - 3*c3*sin(3phi) + 4*c4*sin(4phi)
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fn energy_derivative(&self, cos_phi: T, sin_phi: T) -> (T, T)

Computes energy and derivative together (optimized).

Shares the computation of cos^n and sin(n*phi) terms.

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impl<T: Copy> Copy for Opls<T>

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impl<T> StructuralPartialEq for Opls<T>

Auto Trait Implementations§

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impl<T> Freeze for Opls<T>
where T: Freeze,

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impl<T> RefUnwindSafe for Opls<T>
where T: RefUnwindSafe,

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impl<T> Send for Opls<T>
where T: Send,

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impl<T> Sync for Opls<T>
where T: Sync,

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impl<T> Unpin for Opls<T>
where T: Unpin,

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impl<T> UnwindSafe for Opls<T>
where T: UnwindSafe,

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> CloneToUninit for T
where T: Clone,

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)
Performs copy-assignment from self to dest. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> ToOwned for T
where T: Clone,

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type Owned = T

The resulting type after obtaining ownership.
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fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more
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fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more
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impl<T, U> TryFrom<U> for T
where U: Into<T>,

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type Error = Infallible

The type returned in the event of a conversion error.
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fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.
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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.