Struct Args 

pub struct Args {
    pub accession: Vec<String>,
    pub num_requests: u8,
    pub file: Option<PathBuf>,
    pub keep_single_end: bool,
    pub format: OutputFormat,
}

CLI options and arguments

Fields

accession: Vec<String>

The accession of the run to query (must be an SRR, ERR or DRR accession)

num_requests: u8

The maximum number of concurrent requests to make to the ENA API Default: 1 Maximum: 10 Minimum: 1

file: Option<PathBuf>

The file containing accessions to query If this is specified, the accessions will be read from this file If this is not specified, the accessions will be read from the command line

keep_single_end: bool

Keep single end reads if there are paired end reads too By default, we discard single end reads if there are paired end reads too. This is if the user does wish to have the single end reads

format: OutputFormat

The ourput format for the download links If this is specified, the data will be written to the output format If this is not specified, the data will be written to stdout

Trait Implementations

impl Args for Args

fn augment_args<'b>(__clap_app: Command<'b>) -> Command<'b>

Append to Command so it can instantiate Self.

fn augment_args_for_update<'b>(__clap_app: Command<'b>) -> Command<'b>

Append to Command so it can update self.

impl CommandFactory for Args

fn into_app<'b>() -> Command<'b>

Deprecated, replaced with CommandFactory::command

fn into_app_for_update<'b>() -> Command<'b>

Deprecated, replaced with CommandFactory::command_for_update

fn command<'help>() -> App<'help>

Build a Command that can instantiate Self.

fn command_for_update<'help>() -> App<'help>

Build a Command that can update self.

impl Debug for Args

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for Args

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

impl Parser for Args

fn parse() -> Self

Parse from std::env::args_os(), exit on error

fn try_parse() -> Result<Self, Error>

Parse from std::env::args_os(), return Err on error.

fn parse_from<I, T>(itr: I) -> Self

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, exit on error

fn try_parse_from<I, T>(itr: I) -> Result<Self, Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Parse from iterator, return Err on error.

fn update_from<I, T>(&mut self, itr: I)

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, exit on error

fn try_update_from<I, T>(&mut self, itr: I) -> Result<(), Error>

where I: IntoIterator<Item = T>, T: Into<OsString> + Clone,

Update from iterator, return Err on error.