Struct parasail_rs::AlignResult

pub struct AlignResult { /* private fields */ }

Sequence alignment result.

Implementations

impl AlignResult

pub fn get_score(&self) -> i32

Get alignment score.

pub fn get_end_query(&self) -> i32

Get end position of query sequence.

pub fn get_end_ref(&self) -> i32

Get end position of the reference sequence.

pub fn get_matches(&self) -> Result<i32, AlignResultError>

Get number of matches in the alignment.

pub fn get_similar(&self) -> i32

pub fn get_length(&self) -> Result<i32, AlignResultError>

Get alignment length.

pub fn get_score_table(&self) -> Result<i32, AlignResultError>

Get score table.

pub fn get_matches_table(&self) -> Result<i32, AlignResultError>

Get matches table.

pub fn get_similar_table(&self) -> Result<i32, AlignResultError>

Get similar table.

pub fn get_length_table(&self) -> Result<i32, AlignResultError>

Get length table.

pub fn get_score_row(&self) -> Result<i32, AlignResultError>

Get score row.

pub fn get_matches_row(&self) -> Result<i32, AlignResultError>

Get matches row.

pub fn get_similar_row(&self) -> Result<i32, AlignResultError>

Get similar row.

pub fn get_length_row(&self) -> Result<i32, AlignResultError>

Get length row.

pub fn get_score_col(&self) -> Result<i32, AlignResultError>

Get score column.

pub fn get_matches_col(&self) -> Result<i32, AlignResultError>

Get matches column.

pub fn get_similar_col(&self) -> Result<i32, AlignResultError>

Get similar column.

pub fn get_length_col(&self) -> Result<i32, AlignResultError>

Get length column

pub fn get_trace_table(&self) -> Result<i32, AlignResultError>

Get trace table.

pub fn print_traceback(&self, query: &[u8], reference: &[u8])

Get alignment strings and statistics

pub fn get_traceback_strings( &self, query: &[u8], reference: &[u8], ) -> Result<Traceback, AlignResultError>

Get alignment strings.

pub fn get_cigar( &self, query: &[u8], reference: &[u8], ) -> Result<String, AlignResultError>

Get CIGAR string.

pub fn is_global(&self) -> bool

Check if the alignment mode is global.

pub fn is_semi_global(&self) -> bool

Check if the alignment mode is semi-global.

pub fn is_local(&self) -> bool

Check if the alignment mode is local.

pub fn is_saturated(&self) -> bool

Check if the solution width is saturated (i.e., using 8-bit solution width first and falling back to 16-bit if necessary).

pub fn is_banded(&self) -> bool

Check if banded alignment is used.

pub fn is_scan(&self) -> bool

Check if vector strategy is scan.

pub fn is_striped(&self) -> bool

Check if vector strategy is striped.

pub fn is_diag(&self) -> bool

Check if vector strategy is diagonal.

pub fn is_blocked(&self) -> bool

pub fn is_stats(&self) -> bool

Check if statistics are returned from alignment.

pub fn is_stats_table(&self) -> bool

Check if result is a stats table

pub fn is_table(&self) -> bool

Check if result is a table

pub fn is_rowcol(&self) -> bool

Check if result is a last row and column of table

pub fn is_stats_rowcol(&self) -> bool

Check if result is a row and column of table with additional statistics.

pub fn is_trace(&self) -> bool

Check if result is trace enabled.

Trait Implementations

impl Clone for AlignResult

fn clone(&self) -> AlignResult

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AlignResult

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.