Struct Table 

pub struct Table<'a> { /* private fields */ }

A view into a score table from an alignment result.

Layout

• Rows represent positions in the query sequence (0..query_len)
• Columns represent positions in the reference sequence (0..ref_len)
• Data is stored as a flattened 1D array: data[row * cols + col]

Example

use parasail_rs::prelude::Aligner;

let query = b"ACGT";
let reference = b"ACGT";
let aligner = Aligner::new().use_table().build();
let result = aligner.align(Some(query), reference)?;

let table = result.get_score_table()?;
println!("Table dimensions: {} rows x {} cols", table.rows(), table.cols());

// Access specific cell
if let Some(score) = table.get(0, 0) {
    println!("Score at (0, 0): {}", score);
}

// Get final alignment score
println!("Final score: {}", table.last());

Implementations

impl<'a> Table<'a>

pub fn get(&self, row: usize, col: usize) -> Option<i32>

Get the value at the given row and column index.

Returns None if indices are out of bounds.

Example

let table = result.get_score_table()?;
if let Some(score) = table.get(2, 3) {
    println!("Score at (2, 3): {}", score);
}

pub fn rows(&self) -> usize

Get the number of rows (query length).

pub fn cols(&self) -> usize

Get the number of columns (reference length).

pub fn as_slice(&self) -> &[i32]

Get the raw underlying data as a 1D slice.

The data is stored in row-major order, so element at (row, col) can be accessed at index row * cols + col.

pub fn last(&self) -> i32

Get the value at the last cell (bottom-right of DP table).

Trait Implementations

impl<'a> Debug for Table<'a>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for Table<'_>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.