Enum Tag

pub enum Tag {
    tp(Type),
    cm(Type),
    s1(Type),
    s2(Type),
    NM(Type),
    MD(Type),
    AS(Type),
    SA(Type),
    ms(Type),
    nn(Type),
    ts(Type),
    cg(Type),
    cs(Type),
    dv(Type),
    de(Type),
    rl(Type),
    zd(Type),
}

Enum representing the possible types of tags.

Variants

tp(Type)

Type of aln: P/primary, S/secondary and I,i/inversion.

cm(Type)

Number of minimizers on the chain.

s1(Type)

Chaining score.

s2(Type)

Chaining score of the best secondary chain.

NM(Type)

Total number of mismatches and gaps in the alignment.

MD(Type)

To generate the ref sequence in the alignment.

AS(Type)

DP alignment score.

SA(Type)

List of other supplementary alignments.

ms(Type)

DP score of the max scoring segment in the alignment.

nn(Type)

Number of ambiguous bases in the alignment.

ts(Type)

Transcript strand (splice mode only).

cg(Type)

CIGAR string.

cs(Type)

Difference string.

dv(Type)

Approximate per-base sequence divergence.

de(Type)

Gap-compressed per-base sequence divergence.

rl(Type)

Length of query regions harboring repetitive seeds.

zd(Type)

ZD?

Implementations

impl Tag

pub fn parse(tag: &str, value: Type) -> Result<Self>

Parse a tag from a string.

Trait Implementations

impl Debug for Tag

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.