Struct Pos 

pub struct Pos(pub I, pub I);

A (text/ref, pattern/query) position in a pairwise alignment.

A global alignment starts at (0,0) and ends at (n, m).

Tuple Fields

0: I

1: I

Implementations

impl Pos

pub fn start() -> Self

The start of an alignment.

pub fn target(a: Seq<'_>, b: Seq<'_>) -> Self

The target of an alignment.

pub fn diag(&self) -> I

The diagonal of position (i, j) is i-j.

pub fn anti_diag(&self) -> I

The anti diagonal of position (i, j) is i+j.

pub fn mirror(&self) -> Pos

Mirror this position: (i, j) -> (j, i).

pub fn from<T>(i: T, j: T) -> Self

where T: TryInto<I>, <T as TryInto<i32>>::Error: Debug,

Create a position from differently typed positions.

Trait Implementations

impl Add for Pos

type Output = Pos

The resulting type after applying the + operator.

fn add(self, __rhs: Self) -> Self::Output

Performs the + operation.

impl AddAssign for Pos

fn add_assign(&mut self, __rhs: Self)

Performs the += operation.

impl Clone for Pos

fn clone(&self) -> Pos

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Pos

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Pos

fn default() -> Pos

Returns the “default value” for a type.

impl Display for Pos

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Hash for Pos

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl Mul<i32> for Pos

type Output = Pos

The resulting type after applying the * operator.

fn mul(self, rhs: I) -> Pos

Performs the * operation.

impl PartialEq for Pos

fn eq(&self, other: &Pos) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PartialOrd for Pos

Partial ordering by (a,b) <= (c,d) when a<=c and b<=d. (a,b) < (c,d) when a<=c and b<=d and a<c or b<d.

fn partial_cmp(&self, other: &Self) -> Option<Ordering>

This method returns an ordering between self and other values if one exists.

fn le(&self, other: &Self) -> bool

Tests less than or equal to (for self and other) and is used by the <= operator.

fn lt(&self, other: &Rhs) -> bool

Tests less than (for self and other) and is used by the < operator.

fn gt(&self, other: &Rhs) -> bool

Tests greater than (for self and other) and is used by the > operator.

fn ge(&self, other: &Rhs) -> bool

Tests greater than or equal to (for self and other) and is used by the >= operator.

impl Sub for Pos

type Output = Pos

The resulting type after applying the - operator.

fn sub(self, __rhs: Self) -> Self::Output

Performs the - operation.

impl SubAssign for Pos

fn sub_assign(&mut self, __rhs: Self)

Performs the -= operation.

impl Copy for Pos

impl Eq for Pos

impl StructuralPartialEq for Pos