BiomedicalEmbeddingConfig

oxirs_embed::biomedical_embeddings::types

Struct BiomedicalEmbeddingConfig 

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pub struct BiomedicalEmbeddingConfig {
    pub base_config: ModelConfig,
    pub gene_disease_weight: f32,
    pub drug_target_weight: f32,
    pub pathway_weight: f32,
    pub protein_interaction_weight: f32,
    pub use_sequence_similarity: bool,
    pub use_chemical_structure: bool,
    pub use_taxonomy: bool,
    pub use_temporal_features: bool,
    pub species_filter: Option<String>,
}
Expand description

Configuration for biomedical embeddings

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§base_config: ModelConfig§gene_disease_weight: f32

Weight for gene-disease associations

§drug_target_weight: f32

Weight for drug-target interactions

§pathway_weight: f32

Weight for pathway relationships

§protein_interaction_weight: f32

Weight for protein interactions

§use_sequence_similarity: bool

Enable sequence similarity features

§use_chemical_structure: bool

Enable chemical structure features

§use_taxonomy: bool

Enable taxonomic hierarchy

§use_temporal_features: bool

Enable temporal relationships

§species_filter: Option<String>

Species filter (e.g., “Homo sapiens”, “Mus musculus”)

Trait Implementations§

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impl Clone for BiomedicalEmbeddingConfig

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fn clone(&self) -> BiomedicalEmbeddingConfig

Returns a duplicate of the value. Read more
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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl Debug for BiomedicalEmbeddingConfig

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl Default for BiomedicalEmbeddingConfig

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fn default() -> Self

Returns the “default value” for a type. Read more
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impl<'de> Deserialize<'de> for BiomedicalEmbeddingConfig

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fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>
where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer. Read more
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impl Serialize for BiomedicalEmbeddingConfig

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fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>
where __S: Serializer,

Serialize this value into the given Serde serializer. Read more

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